Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.38963 * 119.59496 * 299.72892 * 12 2 1 14 14 C 1.36473 * 120.62790 * 179.73457 * 13 12 2 15 15 C 1.39923 * 119.63908 * 0.51562 * 14 13 12 16 16 C 1.46006 * 134.03497 * 179.73581 * 15 14 13 17 17 Cl 1.73598 * 126.11653 * 0.04176 * 16 15 14 18 18 N 1.30306 * 107.76024 * 180.02562 * 16 15 14 19 19 N 1.39864 * 110.08000 * 0.02562 * 18 16 15 20 20 H 0.97004 * 125.45178 * 180.02562 * 19 18 16 21 21 C 1.37041 * 109.10058 * 359.97438 * 19 18 16 22 22 C 1.36592 * 119.59581 * 119.99875 * 12 2 1 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 27 27 H 1.07999 * 119.68838 * 359.97438 * 13 12 2 28 28 H 1.08003 * 120.18119 * 180.25200 * 14 13 12 29 29 H 1.08006 * 120.07252 * 359.97438 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 6 2.0323 -0.7104 -1.2305 13 6 1.6961 -2.0425 -1.4392 14 6 2.1349 -2.7047 -2.5488 15 6 2.9399 -2.0382 -3.4793 16 6 3.5724 -2.4267 -4.7366 17 17 3.4801 -3.9886 -5.4887 18 7 4.2182 -1.3912 -5.1932 19 7 4.0677 -0.3084 -4.3208 20 1 4.4549 0.5723 -4.4451 21 6 3.2846 -0.6902 -3.2630 22 6 2.8170 -0.0387 -2.1242 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7091 1.1614 3.4844 27 1 1.0785 -2.5575 -0.7183 28 1 1.8659 -3.7389 -2.7058 29 1 3.0744 0.9954 -1.9482 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079187.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = 52.310224 kcal Electronic energy + Delta-G solvation = -15356.481147 eV Core-core repulsion = 12691.656544 eV Total energy + Delta-G solvation = -2664.824603 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.29020 -38.95624 -37.88182 -35.74925 -33.39630 -32.80201 -30.37464 -29.60675 -27.16827 -24.37674 -23.71239 -22.66637 -21.48073 -18.89589 -18.23634 -17.44572 -16.70224 -16.30615 -16.16323 -16.05470 -14.90152 -14.73897 -14.38128 -13.72116 -13.50000 -13.24718 -12.98867 -12.88800 -12.82339 -12.38637 -12.28695 -12.12254 -11.97705 -11.71744 -11.33941 -11.04055 -10.91863 -10.44335 -9.42749 -8.95862 -8.07437 -6.20462 -0.07154 0.34671 0.56738 1.25111 1.43542 1.47302 1.57413 1.91106 2.45851 2.88634 3.21720 3.44563 3.72592 4.09363 4.17174 4.47574 4.55102 4.76460 4.94665 5.03927 5.12546 5.20553 5.30417 5.51592 5.56436 5.72106 5.88119 6.07431 6.10169 6.22300 6.38576 6.41220 6.88354 7.47594 8.97297 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.005309 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.990230 B = 5272.935127 C = 5523.717200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.069 3.931 3 H 0.011 0.989 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.280 1.280 12 C 0.006 3.994 13 C -0.142 4.142 14 C -0.038 4.038 15 C -0.198 4.198 16 C 0.140 3.860 17 Cl 0.035 6.965 18 N -0.254 5.254 19 N -0.490 5.490 20 H 0.456 0.544 21 C 0.136 3.864 22 C -0.163 4.163 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.037 0.963 26 H 0.261 0.739 27 H 0.130 0.870 28 H 0.152 0.848 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -5.874 -12.361 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.029 0.971 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.206 1.206 12 C 0.003 3.997 13 C -0.162 4.162 14 C -0.058 4.058 15 C -0.206 4.206 16 C -0.062 4.062 17 Cl 0.063 6.937 18 N -0.073 5.073 19 N -0.210 5.210 20 H 0.304 0.696 21 C 0.021 3.979 22 C -0.185 4.185 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.170 0.830 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.915 -5.456 -13.256 14.860 hybrid contribution -0.015 0.029 1.508 1.508 sum 3.900 -5.427 -11.749 13.516 Atomic orbital electron populations 1.21639 0.96913 0.99737 0.99865 1.17840 0.93483 0.94263 0.89349 0.97081 1.21384 1.31042 1.12402 0.90827 0.92636 1.25651 0.95268 0.95644 1.01630 1.70004 1.37602 1.23989 1.23947 0.85606 0.78175 0.78752 0.79746 1.19196 1.21030 1.20582 1.20115 0.91452 0.94306 0.93811 1.20725 1.02929 0.94384 0.98146 1.20498 0.93824 1.00205 0.91292 1.19587 1.08806 0.94546 0.97681 1.23809 0.99192 0.90106 0.93114 1.98387 1.96875 1.17692 1.80755 1.76373 1.20731 0.94576 1.15574 1.45632 1.46325 1.12340 1.16705 0.69558 1.18739 0.94322 0.94000 0.90818 1.19782 1.04214 1.01025 0.93446 0.92113 0.95527 0.94353 0.92947 0.85244 0.82993 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.78 71.98 0.63 -5.02 15 2 C 0.07 3.28 2.46 -12.29 -0.03 3.25 15 3 H 0.01 0.57 7.83 -2.39 -0.02 0.55 15 4 C -0.52 -26.96 8.22 25.60 0.21 -26.75 15 5 H 0.06 2.88 7.59 -2.91 -0.02 2.85 15 6 C 0.02 0.89 5.30 84.66 0.45 1.34 15 7 N -0.92 -50.64 11.32 21.45 0.24 -50.40 15 8 Si 0.95 42.07 29.54 68.60 2.03 44.09 15 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 12 C 0.01 0.24 4.71 -20.08 -0.09 0.14 15 13 C -0.14 -5.14 8.59 22.03 0.19 -4.95 15 14 C -0.04 -1.18 10.06 22.27 0.22 -0.95 15 15 C -0.20 -6.30 6.37 -20.23 -0.13 -6.43 15 16 C 0.14 4.05 8.09 86.93 0.70 4.75 15 17 Cl 0.04 0.80 29.33 -2.72 -0.08 0.72 15 18 N -0.25 -7.41 12.55 -45.94 -0.58 -7.99 15 19 N -0.49 -13.47 7.37 -51.54 -0.38 -13.85 15 20 H 0.46 9.37 8.96 -213.47 -1.91 7.46 15 21 C 0.14 4.42 7.33 39.21 0.29 4.71 15 22 C -0.16 -5.82 9.63 22.14 0.21 -5.60 15 23 H 0.06 3.10 6.07 -2.39 -0.01 3.09 15 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 25 H 0.04 1.64 7.37 -2.39 -0.02 1.63 15 26 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 27 H 0.13 4.66 7.54 -2.91 -0.02 4.64 15 28 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 29 H 0.13 4.36 7.90 -2.91 -0.02 4.33 15 Total: -1.00 -57.87 268.75 3.16 -54.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -0.72 Total: 8.21 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.66 Total: -35.50 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -0.71 Total: -72.23 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -0.08 Total: 0.72 kcal Total: -57.87 3.16 -54.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079187.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.019 kcal (2) G-P(sol) polarization free energy of solvation -57.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds