Wall clock time and date at job start Mon Mar 30 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36006 * 120.33562 * 2 1 4 4 C 1.40509 * 119.71785 * 179.97438 * 3 2 1 5 5 C 1.34920 * 120.31029 * 359.97438 * 4 3 2 6 6 N 1.36559 * 120.60369 * 0.04180 * 5 4 3 7 7 C 1.36813 * 132.57889 * 180.02562 * 6 5 4 8 8 Cl 1.73593 * 126.41477 * 359.97086 * 7 6 5 9 9 C 1.35188 * 107.16935 * 179.97438 * 7 6 5 10 10 C 1.50706 * 125.69058 * 180.26499 * 9 7 6 11 11 C 1.50692 * 109.47162 * 269.71700 * 10 9 7 12 12 H 1.08006 * 120.00105 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00291 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00514 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47017 * 59.99821 * 15 13 11 17 17 H 1.48500 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46651 * 300.00105 * 15 13 11 19 19 N 1.33584 * 108.61906 * 359.97438 * 9 7 6 20 20 C 1.32510 * 109.16287 * 0.02562 * 19 9 7 21 21 H 1.08994 * 109.47608 * 270.02677 * 1 2 3 22 22 H 1.09003 * 109.47223 * 30.02208 * 1 2 3 23 23 H 1.09003 * 109.47452 * 150.01813 * 1 2 3 24 24 H 1.08003 * 120.14186 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.84808 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.70333 * 180.02562 * 5 4 3 27 27 H 1.09007 * 109.46937 * 29.71576 * 10 9 7 28 28 H 1.09001 * 109.47440 * 149.71319 * 10 9 7 29 29 H 0.97001 * 119.99840 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.1738 0.0000 4 6 3.5989 1.1587 0.0005 5 6 4.2672 -0.0134 0.0016 6 7 3.5905 -1.1995 0.0013 7 6 4.0069 -2.5027 0.0026 8 17 5.6512 -3.0592 0.0044 9 6 2.8979 -3.2759 0.0020 10 6 2.8768 -4.7828 0.0086 11 6 2.8679 -5.2914 -1.4099 12 1 2.8770 -4.5932 -2.2339 13 6 2.8490 -6.6478 -1.6559 14 7 2.8394 -7.4980 -0.6525 15 14 2.8372 -7.2782 -3.4143 16 1 4.0550 -6.8028 -4.1188 17 1 2.8178 -8.7631 -3.4077 18 1 1.6302 -6.7699 -4.1142 19 7 1.8240 -2.4815 0.0010 20 6 2.2188 -1.2165 0.0003 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6616 2.1136 0.0004 25 1 4.1464 2.0896 0.0001 26 1 5.3472 -0.0136 0.0024 27 1 3.7623 -5.1564 0.5230 28 1 1.9825 -5.1314 0.5252 29 1 2.8257 -8.4523 -0.8255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:54 Heat of formation + Delta-G solvation = 70.692162 kcal Electronic energy + Delta-G solvation = -15484.592406 eV Core-core repulsion = 12820.564903 eV Total energy + Delta-G solvation = -2664.027502 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.41243 -37.44043 -36.15649 -34.31889 -33.15058 -31.02400 -29.50220 -27.24017 -26.79520 -23.58588 -22.45792 -21.62532 -19.86408 -17.42041 -16.67848 -16.38332 -15.60231 -15.41552 -14.48481 -14.34739 -14.09131 -13.25924 -12.66222 -12.45916 -12.27754 -11.85460 -11.69458 -11.64102 -11.25426 -11.21721 -10.91373 -10.72143 -10.56416 -10.24937 -9.92031 -9.45524 -9.36413 -8.35311 -8.07166 -7.36183 -5.97922 -3.99859 0.91705 1.47288 2.04393 3.21597 3.24469 3.37932 3.41033 3.45545 3.81806 4.46775 4.51399 4.60595 4.91858 4.96737 5.18941 5.37722 5.57537 5.67527 5.73168 5.91830 5.99645 6.13923 6.19349 6.39964 6.67394 7.09895 7.26464 7.57528 7.62887 7.97128 8.34253 8.42450 9.01050 9.61999 11.12691 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.006972 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.998355 B = 4015.234889 C = 4633.008194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.041 4.041 3 C -0.119 4.119 4 C -0.149 4.149 5 C 0.054 3.946 6 N -0.362 5.362 7 C -0.046 4.046 8 Cl -0.004 7.004 9 C 0.147 3.853 10 C 0.086 3.914 11 C -0.502 4.502 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 N -0.475 5.475 20 C 0.226 3.774 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.146 0.854 26 H 0.156 0.844 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 17.155 2.275 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.171 4.171 5 C -0.069 4.069 6 N -0.038 5.038 7 C -0.181 4.181 8 Cl 0.024 6.976 9 C 0.013 3.987 10 C 0.048 3.952 11 C -0.541 4.541 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.196 5.196 20 C -0.016 4.016 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.155 0.845 25 H 0.164 0.836 26 H 0.174 0.826 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.117 16.566 2.320 16.765 hybrid contribution 1.298 -0.041 -1.004 1.642 sum 2.416 16.524 1.316 16.752 Atomic orbital electron populations 1.20642 0.89022 1.03489 1.02846 1.18987 0.96814 0.88287 1.00256 1.20815 0.93623 0.97563 1.02279 1.20619 0.94732 0.96678 1.05027 1.21548 0.98627 0.83514 1.03191 1.42595 1.09098 1.04881 1.47208 1.21392 0.89213 0.81974 1.25567 1.98333 1.14582 1.86962 1.97727 1.21901 0.84462 0.98915 0.93397 1.17919 0.99284 0.79397 0.98560 1.20832 1.50965 0.91398 0.90933 0.92775 1.24922 0.95219 0.96701 0.97185 1.69940 1.50535 1.02302 1.30523 0.86592 0.78684 0.77517 0.84863 1.20242 1.21210 1.20177 1.70930 1.29213 0.97063 1.22396 1.20744 0.79013 0.95014 1.06856 0.90697 0.91236 0.90051 0.84479 0.83634 0.82630 0.93858 0.93964 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.03 36.00 0.36 -0.89 15 2 C -0.04 -0.60 5.90 -104.40 -0.62 -1.22 15 3 C -0.12 -1.36 9.72 -39.53 -0.38 -1.74 15 4 C -0.15 -1.63 9.98 -39.90 -0.40 -2.03 15 5 C 0.05 0.74 10.93 -16.62 -0.18 0.56 15 6 N -0.36 -6.69 2.95 -59.47 -0.18 -6.86 15 7 C -0.05 -0.96 7.58 -16.41 -0.12 -1.09 15 8 Cl 0.00 -0.08 28.84 -51.86 -1.50 -1.57 15 9 C 0.15 3.55 6.25 -82.91 -0.52 3.03 15 10 C 0.09 2.34 5.34 -29.04 -0.16 2.18 15 11 C -0.50 -14.54 9.09 -34.45 -0.31 -14.85 15 12 H 0.05 1.58 7.74 -52.48 -0.41 1.18 15 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 14 N -0.89 -26.67 13.29 55.43 0.74 -25.93 15 15 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 19 N -0.48 -10.97 11.31 -8.95 -0.10 -11.07 15 20 C 0.23 4.37 7.52 -155.98 -1.17 3.19 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.63 8.09 -51.93 -0.42 0.21 15 23 H 0.08 1.15 8.10 -51.93 -0.42 0.73 15 24 H 0.14 1.08 8.06 -52.48 -0.42 0.66 15 25 H 0.15 1.03 8.06 -52.49 -0.42 0.60 15 26 H 0.16 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.04 1.19 7.88 -51.93 -0.41 0.78 15 28 H 0.04 1.21 8.14 -51.93 -0.42 0.79 15 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -32.44 275.62 -8.41 -40.85 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: -2.90 Total: -5.42 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.60 Total: -11.19 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.46 Total: -43.86 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.50 Total: -1.57 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.44 -8.41 -40.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.539 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds