Wall clock time and date at job start Mon Mar 30 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36006 * 120.33562 * 2 1 4 4 C 1.40509 * 119.71785 * 179.97438 * 3 2 1 5 5 C 1.34920 * 120.31029 * 359.97438 * 4 3 2 6 6 N 1.36559 * 120.60369 * 0.04180 * 5 4 3 7 7 C 1.36813 * 132.57889 * 180.02562 * 6 5 4 8 8 Cl 1.73593 * 126.41477 * 359.97086 * 7 6 5 9 9 C 1.35188 * 107.16935 * 179.97438 * 7 6 5 10 10 C 1.50706 * 125.69058 * 180.26499 * 9 7 6 11 11 C 1.50692 * 109.47162 * 269.71700 * 10 9 7 12 12 H 1.08006 * 120.00105 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00291 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00514 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47017 * 59.99821 * 15 13 11 17 17 H 1.48500 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46651 * 300.00105 * 15 13 11 19 19 N 1.33584 * 108.61906 * 359.97438 * 9 7 6 20 20 C 1.32510 * 109.16287 * 0.02562 * 19 9 7 21 21 H 1.08994 * 109.47608 * 270.02677 * 1 2 3 22 22 H 1.09003 * 109.47223 * 30.02208 * 1 2 3 23 23 H 1.09003 * 109.47452 * 150.01813 * 1 2 3 24 24 H 1.08003 * 120.14186 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.84808 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.70333 * 180.02562 * 5 4 3 27 27 H 1.09007 * 109.46937 * 29.71576 * 10 9 7 28 28 H 1.09001 * 109.47440 * 149.71319 * 10 9 7 29 29 H 0.97001 * 119.99840 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.1738 0.0000 4 6 3.5989 1.1587 0.0005 5 6 4.2672 -0.0134 0.0016 6 7 3.5905 -1.1995 0.0013 7 6 4.0069 -2.5027 0.0026 8 17 5.6512 -3.0592 0.0044 9 6 2.8979 -3.2759 0.0020 10 6 2.8768 -4.7828 0.0086 11 6 2.8679 -5.2914 -1.4099 12 1 2.8770 -4.5932 -2.2339 13 6 2.8490 -6.6478 -1.6559 14 7 2.8394 -7.4980 -0.6525 15 14 2.8372 -7.2782 -3.4143 16 1 4.0550 -6.8028 -4.1188 17 1 2.8178 -8.7631 -3.4077 18 1 1.6302 -6.7699 -4.1142 19 7 1.8240 -2.4815 0.0010 20 6 2.2188 -1.2165 0.0003 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5136 24 1 1.6616 2.1136 0.0004 25 1 4.1464 2.0896 0.0001 26 1 5.3472 -0.0136 0.0024 27 1 3.7623 -5.1564 0.5230 28 1 1.9825 -5.1314 0.5252 29 1 2.8257 -8.4523 -0.8255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:54 Heat of formation + Delta-G solvation = 51.234407 kcal Electronic energy + Delta-G solvation = -15485.436157 eV Core-core repulsion = 12820.564903 eV Total energy + Delta-G solvation = -2664.871254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.80045 -38.69374 -37.66538 -35.62732 -35.16314 -32.56236 -31.06111 -28.87636 -27.92754 -25.55989 -23.74631 -22.87044 -21.50757 -18.73976 -18.53410 -17.88612 -17.08557 -16.75304 -16.34377 -15.64367 -15.20659 -14.48798 -14.30838 -14.11009 -13.68980 -13.34086 -13.11970 -12.89074 -12.79692 -12.69486 -12.52841 -12.51686 -12.33863 -11.94586 -11.53577 -11.38853 -10.99972 -10.58556 -9.53543 -8.71561 -8.19025 -6.30625 -0.17396 0.21711 0.54478 1.38515 1.42708 1.50338 1.79941 1.91343 2.41895 2.53804 3.11209 3.27329 3.46565 3.88655 3.99933 4.07383 4.43063 4.53375 4.75447 4.80102 4.84960 5.04420 5.20195 5.26156 5.31962 5.39948 5.54760 5.65152 5.71672 6.08174 6.15169 6.75209 6.86878 7.35559 8.91396 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.006972 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.998355 B = 4015.234889 C = 4633.008194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.076 4.076 3 C -0.082 4.082 4 C -0.121 4.121 5 C 0.024 3.976 6 N -0.363 5.363 7 C -0.056 4.056 8 Cl 0.006 6.994 9 C 0.105 3.895 10 C 0.101 3.899 11 C -0.519 4.519 12 H 0.043 0.957 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.272 1.272 19 N -0.527 5.527 20 C 0.221 3.779 21 H 0.082 0.918 22 H 0.108 0.892 23 H 0.048 0.952 24 H 0.190 0.810 25 H 0.202 0.798 26 H 0.179 0.821 27 H 0.026 0.974 28 H 0.006 0.994 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 21.078 1.269 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.105 4.105 4 C -0.141 4.141 5 C -0.097 4.097 6 N -0.038 5.038 7 C -0.193 4.193 8 Cl 0.034 6.966 9 C -0.029 4.029 10 C 0.063 3.937 11 C -0.558 4.558 12 H 0.062 0.938 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.789 3.211 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.197 1.197 19 N -0.249 5.249 20 C -0.022 4.022 21 H 0.100 0.900 22 H 0.126 0.874 23 H 0.067 0.933 24 H 0.207 0.793 25 H 0.219 0.781 26 H 0.196 0.804 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.632 20.510 1.321 20.617 hybrid contribution 1.149 -0.952 -0.630 1.620 sum 2.781 19.558 0.691 19.766 Atomic orbital electron populations 1.20662 0.87634 1.03768 1.03438 1.19484 0.98116 0.87601 1.02706 1.21529 0.94055 0.98078 0.96855 1.21400 0.94851 0.97420 1.00426 1.22352 1.00231 0.82719 1.04423 1.42668 1.09043 1.05135 1.46925 1.21086 0.88976 0.83177 1.26036 1.98313 1.13359 1.87145 1.97754 1.21315 0.86576 0.97729 0.97237 1.17474 0.96552 0.82446 0.97235 1.21028 1.51424 0.91811 0.91500 0.93846 1.25817 0.94434 0.96713 1.01801 1.70059 1.50950 1.02718 1.32833 0.85515 0.79001 0.77327 0.79297 1.19202 1.19961 1.19709 1.70730 1.29748 0.99086 1.25361 1.21447 0.79914 0.95187 1.05661 0.89989 0.87361 0.93285 0.79268 0.78140 0.80373 0.95573 0.97619 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 10.03 71.23 0.71 -1.47 15 2 C -0.08 -2.06 5.90 -19.72 -0.12 -2.17 15 3 C -0.08 -1.37 9.72 22.30 0.22 -1.16 15 4 C -0.12 -1.89 9.98 22.06 0.22 -1.67 15 5 C 0.02 0.58 10.93 83.19 0.91 1.49 15 6 N -0.36 -13.25 2.95 -342.05 -1.01 -14.26 15 7 C -0.06 -2.46 7.58 83.21 0.63 -1.83 15 8 Cl 0.01 0.24 28.84 -2.72 -0.08 0.16 15 9 C 0.10 5.43 6.25 41.59 0.26 5.69 15 10 C 0.10 5.92 5.34 29.10 0.16 6.08 15 11 C -0.52 -31.71 9.09 25.60 0.23 -31.48 15 12 H 0.04 2.67 7.74 -2.91 -0.02 2.65 15 13 C 0.01 0.65 5.46 84.65 0.46 1.11 15 14 N -0.93 -57.38 13.29 21.45 0.28 -57.09 15 15 Si 0.96 46.20 29.54 68.60 2.03 48.22 15 16 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 17 H -0.27 -12.54 7.11 99.48 0.71 -11.84 15 18 H -0.27 -12.75 7.11 99.48 0.71 -12.05 15 19 N -0.53 -25.87 11.31 -182.24 -2.06 -27.94 15 20 C 0.22 8.59 7.52 134.09 1.01 9.60 15 21 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.11 1.51 8.09 -2.39 -0.02 1.49 15 23 H 0.05 1.41 8.10 -2.39 -0.02 1.39 15 24 H 0.19 1.34 8.06 -2.91 -0.02 1.32 15 25 H 0.20 1.07 8.06 -2.91 -0.02 1.04 15 26 H 0.18 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.03 1.57 7.88 -2.38 -0.02 1.55 15 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 15 Total: -1.00 -77.76 275.62 5.02 -72.74 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: 1.16 Total: -6.02 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.69 Total: -15.81 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -2.78 Total: -99.29 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -77.76 5.02 -72.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.974 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds