Wall clock time and date at job start Mon Mar 30 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30106 * 124.95235 * 2 1 4 4 C 1.35782 * 109.65000 * 180.02562 * 3 2 1 5 5 C 1.39761 * 133.55693 * 180.02562 * 4 3 2 6 6 C 1.37685 * 119.75976 * 180.02562 * 5 4 3 7 7 Cl 1.73598 * 119.75082 * 180.02562 * 6 5 4 8 8 C 1.38901 * 120.50164 * 359.97438 * 6 5 4 9 9 C 1.37820 * 120.44129 * 359.97438 * 8 6 5 10 10 C 1.38819 * 119.84597 * 359.80012 * 9 8 6 11 11 N 1.36026 * 124.94621 * 180.02562 * 2 1 3 12 12 C 1.46491 * 126.35317 * 359.93702 * 11 2 1 13 13 C 1.50702 * 109.46957 * 90.02497 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.09000 * 109.46732 * 269.97344 * 1 2 3 22 22 H 1.09004 * 109.47117 * 29.97265 * 1 2 3 23 23 H 1.08999 * 109.47198 * 149.97294 * 1 2 3 24 24 H 1.07999 * 120.12169 * 359.97438 * 5 4 3 25 25 H 1.08000 * 119.78011 * 180.02562 * 8 6 5 26 26 H 1.08001 * 120.07335 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.47166 * 330.02763 * 12 11 2 28 28 H 1.08994 * 109.47507 * 210.02469 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7080 -0.0006 5 6 4.7583 1.4308 -0.0004 6 6 5.9613 0.7612 -0.0017 7 17 7.4470 1.6592 -0.0007 8 6 5.9953 -0.6274 -0.0026 9 6 4.8245 -1.3545 -0.0018 10 6 3.6024 -0.6962 0.0043 11 7 2.2862 -1.1150 -0.0005 12 6 1.8165 -2.5026 0.0002 13 6 1.6547 -2.9788 -1.4204 14 1 1.8798 -2.3144 -2.2417 15 6 1.2255 -4.2648 -1.6718 16 7 0.9518 -5.0739 -0.6718 17 14 1.0324 -4.8575 -3.4326 18 1 2.3410 -4.7736 -4.1296 19 1 0.5608 -6.2657 -3.4320 20 1 0.0412 -4.0045 -4.1364 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 4.7391 2.5106 0.0000 25 1 6.9455 -1.1407 -0.0032 26 1 4.8579 -2.4340 -0.0021 27 1 0.8572 -2.5612 0.5145 28 1 2.5432 -3.1319 0.5138 29 1 0.6495 -5.9785 -0.8486 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:35 Heat of formation + Delta-G solvation = 48.557984 kcal Electronic energy + Delta-G solvation = -15493.232431 eV Core-core repulsion = 12828.245119 eV Total energy + Delta-G solvation = -2664.987312 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58307 -37.40448 -35.81059 -34.23307 -32.44506 -30.81941 -29.91741 -27.39045 -27.00166 -23.49368 -21.85566 -21.54107 -19.38017 -17.00895 -16.94539 -16.32903 -15.38645 -14.90598 -14.68416 -13.76968 -13.68633 -12.98997 -12.86267 -12.70417 -12.47560 -12.09984 -11.89558 -11.71223 -11.52674 -11.15132 -10.95543 -10.73811 -10.49308 -10.39279 -10.27650 -9.45554 -9.39237 -8.79149 -7.73540 -7.59057 -6.41908 -4.51891 1.29979 1.78293 2.38311 3.13310 3.18270 3.18966 3.29644 3.50600 4.15296 4.17903 4.64485 4.92264 5.02938 5.30546 5.59746 5.67376 5.73988 5.85533 5.88174 5.96741 6.25581 6.28838 6.50213 6.59808 6.79081 6.89286 7.09628 7.28951 7.49967 7.69138 7.85049 8.43251 8.55448 9.16997 10.65302 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.006241 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.540928 B = 4485.152326 C = 5152.050900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.292 3.708 3 N -0.518 5.518 4 C 0.052 3.948 5 C -0.065 4.065 6 C -0.047 4.047 7 Cl -0.085 7.085 8 C -0.116 4.116 9 C -0.077 4.077 10 C 0.055 3.945 11 N -0.454 5.454 12 C 0.236 3.764 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.070 3.930 16 N -0.888 5.888 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 7.176 2.017 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 N -0.240 5.240 4 C -0.069 4.069 5 C -0.085 4.085 6 C -0.076 4.076 7 Cl -0.056 7.056 8 C -0.136 4.136 9 C -0.098 4.098 10 C -0.058 4.058 11 N -0.139 5.139 12 C 0.118 3.882 13 C -0.585 4.585 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.198 1.198 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.545 7.693 2.072 9.172 hybrid contribution 0.322 -1.299 -0.946 1.639 sum 4.867 6.394 1.126 8.114 Atomic orbital electron populations 1.20355 0.84745 1.04856 1.03535 1.23559 0.95881 0.81073 0.96835 1.70368 1.00217 1.27845 1.25560 1.18812 0.91968 0.90310 1.05857 1.19801 0.87877 0.99446 1.01392 1.20279 0.86138 0.91783 1.09440 1.98321 1.34370 1.75588 1.97369 1.20554 0.98038 0.91333 1.03706 1.19966 0.88586 1.00034 1.01184 1.18981 0.86537 0.94634 1.05658 1.46102 1.03509 1.09825 1.54437 1.19782 0.96770 0.72470 0.99205 1.21248 1.47657 0.98483 0.91109 0.91738 1.24931 0.94305 0.96028 0.98225 1.69904 1.43814 1.07532 1.31209 0.86413 0.78979 0.77832 0.83533 1.19851 1.20844 1.19806 0.90091 0.89459 0.88895 0.85116 0.84946 0.84933 0.92848 0.93373 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.95 36.01 0.36 -0.84 15 2 C 0.29 5.83 7.85 -154.84 -1.22 4.61 15 3 N -0.52 -10.69 11.27 -8.24 -0.09 -10.78 15 4 C 0.05 1.04 7.23 -84.70 -0.61 0.43 15 5 C -0.06 -1.12 9.86 -39.21 -0.39 -1.51 15 6 C -0.05 -0.75 6.31 -39.54 -0.25 -1.00 15 7 Cl -0.09 -1.15 28.94 -51.86 -1.50 -2.65 15 8 C -0.12 -1.83 9.80 -39.49 -0.39 -2.21 15 9 C -0.08 -1.41 10.04 -39.52 -0.40 -1.81 15 10 C 0.05 1.14 6.87 -83.97 -0.58 0.56 15 11 N -0.45 -9.80 2.79 -112.44 -0.31 -10.11 15 12 C 0.24 5.50 5.48 -5.20 -0.03 5.47 15 13 C -0.55 -13.93 9.39 -34.44 -0.32 -14.25 15 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 15 16 N -0.89 -23.51 13.29 55.43 0.74 -22.77 15 17 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 15 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.09 1.53 7.65 -51.93 -0.40 1.13 15 24 H 0.13 2.04 8.06 -52.49 -0.42 1.61 15 25 H 0.13 1.74 8.06 -52.49 -0.42 1.31 15 26 H 0.13 2.35 8.06 -52.49 -0.42 1.92 15 27 H 0.05 1.25 7.62 -51.93 -0.40 0.85 15 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 275.38 15.07 4.15 4.15 Total: -1.00 -27.43 275.38 -8.83 -36.26 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.87 Total: -0.21 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.92 Total: -8.87 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.33 Total: -43.66 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.43 -8.83 -36.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.818 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds