Wall clock time and date at job start Mon Mar 30 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30106 * 124.95235 * 2 1 4 4 C 1.35782 * 109.65000 * 180.02562 * 3 2 1 5 5 C 1.39761 * 133.55693 * 180.02562 * 4 3 2 6 6 C 1.37685 * 119.75976 * 180.02562 * 5 4 3 7 7 Cl 1.73598 * 119.75082 * 180.02562 * 6 5 4 8 8 C 1.38901 * 120.50164 * 359.97438 * 6 5 4 9 9 C 1.37820 * 120.44129 * 359.97438 * 8 6 5 10 10 C 1.38819 * 119.84597 * 359.80012 * 9 8 6 11 11 N 1.36026 * 124.94621 * 180.02562 * 2 1 3 12 12 C 1.46491 * 126.35317 * 359.93702 * 11 2 1 13 13 C 1.50702 * 109.46957 * 90.02497 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.09000 * 109.46732 * 269.97344 * 1 2 3 22 22 H 1.09004 * 109.47117 * 29.97265 * 1 2 3 23 23 H 1.08999 * 109.47198 * 149.97294 * 1 2 3 24 24 H 1.07999 * 120.12169 * 359.97438 * 5 4 3 25 25 H 1.08000 * 119.78011 * 180.02562 * 8 6 5 26 26 H 1.08001 * 120.07335 * 180.02562 * 9 8 6 27 27 H 1.09004 * 109.47166 * 330.02763 * 12 11 2 28 28 H 1.08994 * 109.47507 * 210.02469 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7080 -0.0006 5 6 4.7583 1.4308 -0.0004 6 6 5.9613 0.7612 -0.0017 7 17 7.4470 1.6592 -0.0007 8 6 5.9953 -0.6274 -0.0026 9 6 4.8245 -1.3545 -0.0018 10 6 3.6024 -0.6962 0.0043 11 7 2.2862 -1.1150 -0.0005 12 6 1.8165 -2.5026 0.0002 13 6 1.6547 -2.9788 -1.4204 14 1 1.8798 -2.3144 -2.2417 15 6 1.2255 -4.2648 -1.6718 16 7 0.9518 -5.0739 -0.6718 17 14 1.0324 -4.8575 -3.4326 18 1 2.3410 -4.7736 -4.1296 19 1 0.5608 -6.2657 -3.4320 20 1 0.0412 -4.0045 -4.1364 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 4.7391 2.5106 0.0000 25 1 6.9455 -1.1407 -0.0032 26 1 4.8579 -2.4340 -0.0021 27 1 0.8572 -2.5612 0.5145 28 1 2.5432 -3.1319 0.5138 29 1 0.6495 -5.9785 -0.8486 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:35 Heat of formation + Delta-G solvation = 35.302860 kcal Electronic energy + Delta-G solvation = -15493.807217 eV Core-core repulsion = 12828.245119 eV Total energy + Delta-G solvation = -2665.562098 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.08114 -38.75124 -37.07520 -35.99077 -34.22648 -32.17166 -31.38918 -29.14314 -28.41065 -25.33127 -23.26077 -23.00631 -20.91608 -18.87613 -18.42764 -17.92775 -16.71111 -16.58413 -16.35381 -15.25816 -15.13255 -14.51790 -14.30249 -14.19992 -13.87875 -13.57534 -13.34645 -13.15815 -13.11836 -12.73227 -12.67575 -12.24185 -12.07854 -11.91563 -11.75729 -11.06105 -11.01122 -10.73849 -9.17024 -9.07684 -8.36498 -6.54285 -0.10441 0.37239 1.11552 1.38368 1.39070 1.47391 1.77234 1.95286 2.32999 2.72822 2.94775 3.24520 3.59519 3.99273 4.17941 4.29604 4.32926 4.36772 4.67403 4.69086 4.81221 4.84995 5.04532 5.07073 5.21051 5.47820 5.52362 5.60330 5.74433 5.76492 6.22958 6.57811 6.91176 7.18275 8.69395 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.006241 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.540928 B = 4485.152326 C = 5152.050900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.279 3.721 3 N -0.531 5.531 4 C 0.030 3.970 5 C -0.067 4.067 6 C -0.043 4.043 7 Cl -0.056 7.056 8 C -0.098 4.098 9 C -0.095 4.095 10 C 0.026 3.974 11 N -0.470 5.470 12 C 0.253 3.747 13 C -0.557 4.557 14 H 0.050 0.950 15 C 0.030 3.970 16 N -0.913 5.913 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.275 1.275 20 H -0.268 1.268 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.147 0.853 25 H 0.165 0.835 26 H 0.131 0.869 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 7.795 1.486 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.014 3.986 3 N -0.253 5.253 4 C -0.090 4.090 5 C -0.088 4.088 6 C -0.072 4.072 7 Cl -0.027 7.027 8 C -0.118 4.118 9 C -0.116 4.116 10 C -0.086 4.086 11 N -0.156 5.156 12 C 0.134 3.866 13 C -0.595 4.595 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.551 5.551 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.200 1.200 20 H -0.193 1.193 21 H 0.121 0.879 22 H 0.126 0.874 23 H 0.100 0.900 24 H 0.165 0.835 25 H 0.182 0.818 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.511 8.338 1.547 10.114 hybrid contribution 0.173 -1.402 -0.745 1.597 sum 5.684 6.937 0.802 9.004 Atomic orbital electron populations 1.20485 0.82239 1.05213 1.05104 1.24316 0.97400 0.80517 0.96328 1.70357 1.00686 1.28023 1.26219 1.19186 0.92637 0.90447 1.06748 1.20036 0.87464 1.00283 1.00997 1.20388 0.86941 0.92076 1.07760 1.98337 1.32288 1.74920 1.97147 1.20892 0.98397 0.91440 1.01072 1.20132 0.88777 1.00242 1.02452 1.19425 0.86882 0.95420 1.06862 1.46025 1.04329 1.09324 1.55877 1.19366 0.95883 0.73502 0.97873 1.21361 1.47819 0.98641 0.91675 0.93193 1.25638 0.93838 0.96016 1.01741 1.69980 1.44332 1.07882 1.32909 0.85504 0.78808 0.77651 0.79185 1.19920 1.19994 1.19289 0.87864 0.87410 0.90034 0.83485 0.81779 0.85142 0.93336 0.95157 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.23 9.95 71.24 0.71 -1.52 15 2 C 0.28 11.26 7.85 137.93 1.08 12.34 15 3 N -0.53 -21.88 11.27 -179.98 -2.03 -23.91 15 4 C 0.03 1.20 7.23 39.45 0.29 1.49 15 5 C -0.07 -2.25 9.86 22.51 0.22 -2.03 15 6 C -0.04 -1.26 6.31 22.30 0.14 -1.12 15 7 Cl -0.06 -1.34 28.94 -2.72 -0.08 -1.42 15 8 C -0.10 -2.90 9.80 22.33 0.22 -2.68 15 9 C -0.10 -3.47 10.04 22.31 0.22 -3.24 15 10 C 0.03 1.08 6.87 38.84 0.27 1.35 15 11 N -0.47 -20.74 2.79 -509.64 -1.42 -22.16 15 12 C 0.25 12.15 5.48 85.64 0.47 12.62 15 13 C -0.56 -28.87 9.39 25.60 0.24 -28.63 15 14 H 0.05 2.69 7.81 -2.91 -0.02 2.67 15 15 C 0.03 1.52 5.46 84.66 0.46 1.98 15 16 N -0.91 -48.65 13.29 21.45 0.28 -48.37 15 17 Si 0.96 40.78 29.54 68.60 2.03 42.81 15 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 19 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 21 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.11 2.83 8.14 -2.38 -0.02 2.81 15 23 H 0.08 2.70 7.65 -2.39 -0.02 2.68 15 24 H 0.15 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.16 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.13 4.70 8.06 -2.91 -0.02 4.68 15 27 H 0.05 2.34 7.62 -2.38 -0.02 2.32 15 28 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 29 H 0.27 13.75 8.31 -92.70 -0.77 12.98 15 Total: -1.00 -58.11 275.38 4.27 -53.84 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.16 Total: 8.66 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.32 Total: -9.44 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -3.17 Total: -94.44 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -58.11 4.27 -53.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.142 kcal (2) G-P(sol) polarization free energy of solvation -58.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds