Wall clock time and date at job start Mon Mar 30 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.30235 * 126.10545 * 269.69143 * 11 10 9 13 13 N 1.39866 * 110.09299 * 179.89597 * 12 11 10 14 14 H 0.96996 * 125.47080 * 180.15729 * 13 12 11 15 15 C 1.37076 * 109.06140 * 0.37635 * 13 12 11 16 16 C 1.40809 * 106.74640 * 359.78513 * 15 13 12 17 17 C 1.39918 * 119.74340 * 179.97438 * 16 15 13 18 18 C 1.36460 * 119.81020 * 359.97438 * 17 16 15 19 19 C 1.38943 * 120.64053 * 359.97438 * 18 17 16 20 20 C 1.37711 * 120.65792 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.14493 * 180.02562 * 20 19 18 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.08006 * 120.09330 * 180.02562 * 17 16 15 28 28 H 1.07992 * 119.67996 * 180.02562 * 18 17 16 29 29 H 1.08005 * 119.66990 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1132 -5.6343 1.0537 13 7 0.4370 -6.7965 0.6685 14 1 0.0583 -7.4539 1.2728 15 6 0.3997 -6.8599 -0.7003 16 6 1.0613 -5.7122 -1.1778 17 6 1.1816 -5.5033 -2.5560 18 6 0.6579 -6.4127 -3.4283 19 6 0.0052 -7.5470 -2.9616 20 6 -0.1263 -7.7753 -1.6100 21 17 -0.9438 -9.1974 -1.0415 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.6883 -4.6252 -2.9284 28 1 0.7523 -6.2495 -4.4916 29 1 -0.4031 -8.2567 -3.6660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260104150.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:10 Heat of formation + Delta-G solvation = 57.566706 kcal Electronic energy + Delta-G solvation = -15117.556458 eV Core-core repulsion = 12452.959793 eV Total energy + Delta-G solvation = -2664.596665 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.10909 -37.38663 -36.32773 -34.30261 -32.44482 -30.46988 -29.77231 -28.88296 -25.39651 -22.99258 -22.24185 -21.68027 -19.23933 -17.84496 -16.83555 -16.32626 -15.46121 -14.85474 -14.62182 -14.43726 -14.27769 -13.08782 -12.86133 -12.72187 -12.25466 -12.18981 -11.42468 -11.33724 -11.20076 -11.07096 -10.96312 -10.73319 -10.55752 -10.03789 -9.86415 -9.33105 -9.16396 -8.60941 -8.36737 -7.77648 -6.01672 -4.05391 0.88793 1.48717 2.04214 2.69330 2.85145 3.33200 3.37946 3.40002 3.74902 4.43888 4.61120 4.81230 4.91894 5.01547 5.28813 5.34301 5.59677 5.69439 5.83236 6.15111 6.34055 6.41417 6.51351 6.59219 6.76992 6.96543 7.38788 7.63357 7.70970 7.91745 7.96580 8.34800 9.00864 9.58781 11.09451 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.040584 B = 0.004717 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.767476 B = 5934.700666 C = 6214.910520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.042 4.042 11 C 0.136 3.864 12 N -0.255 5.255 13 N -0.512 5.512 14 H 0.437 0.563 15 C 0.137 3.863 16 C -0.161 4.161 17 C -0.018 4.018 18 C -0.162 4.162 19 C -0.059 4.059 20 C -0.070 4.070 21 Cl -0.080 7.080 22 H 0.262 0.738 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -15.827 -5.689 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.081 4.081 11 C -0.042 4.042 12 N -0.068 5.068 13 N -0.224 5.224 14 H 0.281 0.719 15 C 0.019 3.981 16 C -0.170 4.170 17 C -0.039 4.039 18 C -0.182 4.182 19 C -0.081 4.081 20 C -0.101 4.101 21 Cl -0.052 7.052 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.189 -15.890 -4.301 16.463 hybrid contribution -0.084 0.326 -0.397 0.520 sum 0.105 -15.564 -4.697 16.258 Atomic orbital electron populations 1.69963 1.06103 1.26826 1.50299 1.25011 0.94830 0.99279 0.95182 0.86632 0.79547 0.83001 0.78666 1.20153 1.21335 1.20186 1.21139 0.93067 0.90645 1.51323 0.92363 1.19062 0.93605 0.90058 0.97936 1.20479 0.97990 0.87047 1.02602 1.24286 0.96042 0.96431 0.87399 1.76709 1.12000 0.94995 1.23090 1.45993 1.52040 1.21674 1.02726 0.71863 1.18448 0.98357 0.95658 0.85662 1.19883 1.06512 0.95730 0.94844 1.20603 0.94809 0.98127 0.90327 1.20569 1.02555 0.94936 1.00127 1.20859 0.97288 0.97761 0.92151 1.19710 1.06794 0.90929 0.92618 1.98341 1.78204 1.39025 1.89605 0.92862 0.96122 0.96153 0.90466 0.90695 0.84319 0.84740 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.80 4.95 -27.88 -0.14 0.66 15 10 C -0.04 -0.84 5.75 -27.89 -0.16 -1.00 15 11 C 0.14 2.62 6.69 -80.18 -0.54 2.08 15 12 N -0.25 -4.86 12.55 34.84 0.44 -4.43 15 13 N -0.51 -8.22 7.37 32.38 0.24 -7.98 15 14 H 0.44 5.72 8.96 -182.78 -1.64 4.08 15 15 C 0.14 2.18 7.13 -84.13 -0.60 1.58 15 16 C -0.16 -2.76 6.33 -105.21 -0.67 -3.42 15 17 C -0.02 -0.26 10.05 -39.59 -0.40 -0.66 15 18 C -0.16 -1.90 9.96 -39.96 -0.40 -2.30 15 19 C -0.06 -0.69 9.80 -39.51 -0.39 -1.08 15 20 C -0.07 -0.94 6.34 -39.36 -0.25 -1.19 15 21 Cl -0.08 -0.94 28.97 -51.86 -1.50 -2.44 15 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 25 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 27 H 0.14 1.82 8.06 -52.48 -0.42 1.39 15 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 29 H 0.14 1.20 8.06 -52.48 -0.42 0.77 15 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -30.70 276.35 -9.03 -39.73 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.14 Total: -0.98 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.94 Total: -18.41 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.41 Total: -38.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.70 -9.03 -39.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104150.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.297 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds