Wall clock time and date at job start Mon Mar 30 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.30235 * 126.10545 * 269.69143 * 11 10 9 13 13 N 1.39866 * 110.09299 * 179.89597 * 12 11 10 14 14 H 0.96996 * 125.47080 * 180.15729 * 13 12 11 15 15 C 1.37076 * 109.06140 * 0.37635 * 13 12 11 16 16 C 1.40809 * 106.74640 * 359.78513 * 15 13 12 17 17 C 1.39918 * 119.74340 * 179.97438 * 16 15 13 18 18 C 1.36460 * 119.81020 * 359.97438 * 17 16 15 19 19 C 1.38943 * 120.64053 * 359.97438 * 18 17 16 20 20 C 1.37711 * 120.65792 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 120.14493 * 180.02562 * 20 19 18 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.08006 * 120.09330 * 180.02562 * 17 16 15 28 28 H 1.07992 * 119.67996 * 180.02562 * 18 17 16 29 29 H 1.08005 * 119.66990 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1132 -5.6343 1.0537 13 7 0.4370 -6.7965 0.6685 14 1 0.0583 -7.4539 1.2728 15 6 0.3997 -6.8599 -0.7003 16 6 1.0613 -5.7122 -1.1778 17 6 1.1816 -5.5033 -2.5560 18 6 0.6579 -6.4127 -3.4283 19 6 0.0052 -7.5470 -2.9616 20 6 -0.1263 -7.7753 -1.6100 21 17 -0.9438 -9.1974 -1.0415 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.6883 -4.6252 -2.9284 28 1 0.7523 -6.2495 -4.4916 29 1 -0.4031 -8.2567 -3.6660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260104150.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:09 Heat of formation + Delta-G solvation = 39.372530 kcal Electronic energy + Delta-G solvation = -15118.345417 eV Core-core repulsion = 12452.959793 eV Total energy + Delta-G solvation = -2665.385623 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.33243 -38.47283 -37.32792 -36.10743 -34.21648 -31.96869 -30.94754 -30.20363 -27.31193 -24.14193 -23.58877 -23.31528 -20.67807 -19.06389 -18.42540 -17.97539 -16.53799 -16.48724 -16.02673 -15.82942 -15.30655 -14.81011 -14.55089 -14.13561 -13.76776 -13.22384 -13.13955 -12.80731 -12.57253 -12.35573 -12.33764 -12.14601 -12.04054 -11.81436 -11.56060 -11.25754 -10.79626 -10.52422 -9.75768 -8.93430 -8.16486 -6.28477 -0.22443 0.40660 1.03466 1.33907 1.45344 1.48288 1.55968 1.65456 2.44965 2.65875 3.17409 3.42339 3.54534 3.81860 3.95275 4.31558 4.46234 4.49628 4.76488 4.77595 4.82378 4.97386 5.19742 5.37837 5.47585 5.51571 5.64846 5.78082 5.84309 6.22104 6.25152 6.56048 6.87785 7.41094 8.95375 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.040584 B = 0.004717 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.767476 B = 5934.700666 C = 6214.910520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.042 3.958 10 C -0.027 4.027 11 C 0.114 3.886 12 N -0.282 5.282 13 N -0.507 5.507 14 H 0.447 0.553 15 C 0.123 3.877 16 C -0.188 4.188 17 C -0.037 4.037 18 C -0.145 4.145 19 C -0.048 4.048 20 C -0.078 4.078 21 Cl -0.065 7.065 22 H 0.263 0.737 23 H -0.019 1.019 24 H -0.003 1.003 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.173 0.827 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -16.645 -7.541 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.004 3.996 10 C -0.066 4.066 11 C -0.063 4.063 12 N -0.096 5.096 13 N -0.222 5.222 14 H 0.293 0.707 15 C 0.005 3.995 16 C -0.196 4.196 17 C -0.057 4.057 18 C -0.164 4.164 19 C -0.069 4.069 20 C -0.109 4.109 21 Cl -0.036 7.036 22 H 0.072 0.928 23 H 0.000 1.000 24 H 0.016 0.984 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.191 0.809 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.858 -16.730 -6.157 17.848 hybrid contribution -0.369 0.441 0.125 0.588 sum 0.488 -16.289 -6.033 17.377 Atomic orbital electron populations 1.70118 1.08016 1.27830 1.51582 1.25996 0.95676 1.03467 0.94661 0.85471 0.78180 0.77835 0.79384 1.18540 1.21313 1.19296 1.21619 0.93911 0.91560 1.50668 0.91067 1.18836 0.93854 0.92067 0.94876 1.20162 0.96868 0.86052 1.03529 1.24091 0.96995 0.96454 0.88810 1.76556 1.12765 0.96291 1.23957 1.45894 1.51802 1.21080 1.03417 0.70696 1.18712 0.99002 0.96234 0.85504 1.20069 1.07787 0.96187 0.95573 1.20857 0.95892 0.99384 0.89574 1.21029 1.00175 0.93619 1.01594 1.21370 0.95642 0.97986 0.91854 1.19933 1.06808 0.91168 0.93013 1.98347 1.77774 1.37839 1.89627 0.92849 1.00033 0.98422 0.88451 0.90757 0.83756 0.80939 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.29 21.45 0.28 -56.81 15 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.51 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.54 -29.95 9.11 25.60 0.23 -29.72 15 8 H 0.07 3.68 7.74 -2.91 -0.02 3.65 15 9 C 0.04 2.22 4.95 29.85 0.15 2.37 15 10 C -0.03 -1.12 5.75 29.85 0.17 -0.94 15 11 C 0.11 4.51 6.69 44.79 0.30 4.81 15 12 N -0.28 -11.12 12.55 -43.69 -0.55 -11.67 15 13 N -0.51 -16.49 7.37 -51.47 -0.38 -16.87 15 14 H 0.45 11.80 8.96 -213.48 -1.91 9.89 15 15 C 0.12 3.85 7.13 39.22 0.28 4.13 15 16 C -0.19 -6.44 6.33 -20.24 -0.13 -6.57 15 17 C -0.04 -1.00 10.05 22.26 0.22 -0.78 15 18 C -0.14 -2.91 9.96 22.02 0.22 -2.69 15 19 C -0.05 -0.94 9.80 22.31 0.22 -0.72 15 20 C -0.08 -1.95 6.34 22.42 0.14 -1.81 15 21 Cl -0.06 -1.37 28.97 -2.72 -0.08 -1.45 15 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 23 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 15 24 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 25 H 0.10 3.56 8.14 -2.39 -0.02 3.54 15 26 H 0.07 3.03 8.14 -2.39 -0.02 3.01 15 27 H 0.14 3.65 8.06 -2.91 -0.02 3.63 15 28 H 0.17 2.15 8.06 -2.91 -0.02 2.13 15 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 15 Total: -1.00 -67.92 276.35 2.84 -65.08 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -0.73 Total: 7.67 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 2.27 Total: -31.46 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -0.64 Total: -85.35 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -67.92 2.84 -65.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104150.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.454 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds