Wall clock time and date at job start Mon Mar 30 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38764 * 119.66423 * 2 1 4 4 C 1.37882 * 120.44165 * 179.97438 * 3 2 1 5 5 C 1.38794 * 119.69381 * 0.02562 * 4 3 2 6 6 C 1.40492 * 119.84445 * 0.12791 * 5 4 3 7 7 C 1.36622 * 119.67264 * 180.33483 * 2 1 3 8 8 N 1.35822 * 106.96026 * 180.27306 * 6 5 4 9 9 C 1.30274 * 109.63906 * 359.77952 * 8 6 5 10 10 Cl 1.73598 * 124.97052 * 179.97438 * 9 8 6 11 11 N 1.36127 * 110.05899 * 359.97438 * 9 8 6 12 12 C 1.46499 * 126.34991 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46992 * 90.02504 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.08997 * 109.46995 * 89.99697 * 1 2 3 22 22 H 1.09003 * 109.46580 * 209.99817 * 1 2 3 23 23 H 1.09004 * 109.47588 * 329.99421 * 1 2 3 24 24 H 1.07994 * 119.77637 * 359.96556 * 3 2 1 25 25 H 1.08001 * 120.14885 * 179.97438 * 4 3 2 26 26 H 1.07997 * 120.05542 * 359.56360 * 7 2 1 27 27 H 1.09002 * 109.47391 * 330.02494 * 12 11 9 28 28 H 1.09001 * 109.46813 * 210.02551 * 12 11 9 29 29 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.2058 0.0000 4 6 3.5725 1.2245 0.0005 5 6 4.2763 0.0282 0.0005 6 6 3.5806 -1.1923 -0.0027 7 6 2.1833 -1.1870 -0.0069 8 7 4.5130 -2.1799 0.0043 9 6 5.7057 -1.6559 0.0067 10 17 7.1888 -2.5581 0.0160 11 7 5.6189 -0.2974 0.0009 12 6 6.7410 0.6444 0.0019 13 6 7.1315 0.9620 -1.4186 14 1 6.5969 0.5082 -2.2399 15 6 8.1705 1.8330 -1.6696 16 7 8.8211 2.3861 -0.6694 17 14 8.6539 2.2273 -3.4303 18 1 7.8817 3.4039 -3.9040 19 1 10.1061 2.5323 -3.4885 20 1 8.3584 1.0592 -4.2982 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6447 2.1357 -0.0006 25 1 4.1022 2.1657 0.0001 26 1 1.6390 -2.1198 -0.0053 27 1 7.5895 0.1982 0.5208 28 1 6.4451 1.5615 0.5112 29 1 9.5523 2.9985 -0.8461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:04 Heat of formation + Delta-G solvation = 38.223656 kcal Electronic energy + Delta-G solvation = -15495.422413 eV Core-core repulsion = 12829.986970 eV Total energy + Delta-G solvation = -2665.435442 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.07073 -38.83228 -37.87771 -36.08302 -34.30205 -32.73643 -30.65944 -29.42651 -27.27720 -25.29608 -23.98189 -22.28725 -21.53260 -18.93775 -18.24145 -18.07315 -16.70618 -16.62861 -16.25995 -15.41421 -15.02948 -14.70739 -14.56541 -14.23784 -13.79928 -13.29362 -13.14368 -13.06316 -12.80419 -12.72187 -12.49679 -12.45546 -12.15133 -12.08454 -11.79213 -11.12473 -11.10978 -10.76537 -9.15945 -9.03336 -8.38066 -6.55828 -0.07776 0.22652 0.57467 1.35589 1.36787 1.47408 1.62392 1.98067 2.32035 2.85867 2.93095 3.34302 3.93893 4.10678 4.18149 4.29104 4.45989 4.61693 4.79069 4.82625 4.98989 5.01194 5.20179 5.33266 5.47371 5.49229 5.60641 5.69612 5.72183 5.95493 5.98004 6.52128 6.66746 7.15843 8.68661 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.007769 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.404946 B = 3603.164956 C = 4563.145084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.090 4.090 3 C -0.093 4.093 4 C -0.112 4.112 5 C 0.028 3.972 6 C 0.024 3.976 7 C -0.079 4.079 8 N -0.505 5.505 9 C 0.300 3.700 10 Cl 0.047 6.953 11 N -0.459 5.459 12 C 0.251 3.749 13 C -0.554 4.554 14 H 0.050 0.950 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.121 0.879 26 H 0.144 0.856 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -2.585 1.352 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.133 4.133 5 C -0.082 4.082 6 C -0.095 4.095 7 C -0.098 4.098 8 N -0.230 5.230 9 C 0.010 3.990 10 Cl 0.075 6.925 11 N -0.148 5.148 12 C 0.131 3.869 13 C -0.592 4.592 14 H 0.068 0.932 15 C -0.173 4.173 16 N -0.551 5.551 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.197 1.197 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.182 0.818 25 H 0.139 0.861 26 H 0.162 0.838 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.749 -3.292 1.419 12.284 hybrid contribution 1.564 0.880 -0.704 1.928 sum -10.185 -2.411 0.715 10.491 Atomic orbital electron populations 1.20785 0.87461 1.04141 1.03410 1.19797 0.98200 0.91327 0.99910 1.21176 0.91373 0.99459 0.99208 1.20283 0.94944 0.94397 1.03675 1.19333 0.82954 0.98203 1.07697 1.19399 0.95117 0.87427 1.07606 1.20061 0.88307 0.99846 1.01630 1.70243 0.96332 1.31639 1.24812 1.23529 0.90573 0.81034 1.03862 1.98385 1.26373 1.70910 1.96830 1.45856 1.07166 1.05840 1.55913 1.19451 0.82044 0.86994 0.98383 1.21319 1.17928 1.28671 0.91304 0.93203 1.25659 0.95059 0.94599 1.01982 1.69989 1.22249 1.29984 1.32921 0.85423 0.77929 0.78763 0.78877 1.19333 1.19760 1.19739 0.90081 0.90511 0.89681 0.81811 0.86075 0.83842 0.93931 0.94428 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.99 71.24 0.71 -0.87 15 2 C -0.09 -2.29 5.84 -20.12 -0.12 -2.41 15 3 C -0.09 -2.52 9.67 22.31 0.22 -2.30 15 4 C -0.11 -4.07 10.05 22.32 0.22 -3.85 15 5 C 0.03 1.22 6.88 38.83 0.27 1.49 15 6 C 0.02 0.98 7.23 39.43 0.29 1.26 15 7 C -0.08 -2.47 9.67 22.25 0.22 -2.25 15 8 N -0.51 -22.14 11.28 -182.81 -2.06 -24.20 15 9 C 0.30 13.46 8.46 179.98 1.52 14.99 15 10 Cl 0.05 1.85 28.72 -2.72 -0.08 1.77 15 11 N -0.46 -21.61 2.79 -513.06 -1.43 -23.04 15 12 C 0.25 12.77 5.72 85.63 0.49 13.26 15 13 C -0.55 -30.08 9.39 25.60 0.24 -29.84 15 14 H 0.05 2.81 7.81 -2.91 -0.02 2.79 15 15 C 0.03 1.53 5.46 84.66 0.46 2.00 15 16 N -0.91 -50.29 13.29 21.45 0.28 -50.00 15 17 Si 0.97 42.12 29.54 68.60 2.03 44.15 15 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.08 1.05 8.08 -2.39 -0.02 1.03 15 23 H 0.08 1.03 8.08 -2.39 -0.02 1.01 15 24 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.14 3.80 8.06 -2.91 -0.02 3.78 15 27 H 0.04 2.24 7.77 -2.39 -0.02 2.22 15 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 15 Total: -1.00 -62.00 275.80 4.42 -57.58 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.16 Total: 2.27 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 4.52 Total: -8.53 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -3.21 Total: -97.24 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: 1.85 SS G_CDS: -0.08 Total: 1.77 kcal Total: -62.00 4.42 -57.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.806 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds