Wall clock time and date at job start Mon Mar 30 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47078 * 2 1 4 4 C 1.50703 * 109.47214 * 240.00389 * 2 1 3 5 5 H 1.07995 * 119.99634 * 240.00293 * 4 2 1 6 6 C 1.37879 * 120.00020 * 59.99541 * 4 2 1 7 7 N 1.31516 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46781 * 90.00303 * 8 6 4 10 10 H 1.48492 * 109.46969 * 210.00330 * 8 6 4 11 11 H 1.48501 * 109.47085 * 330.00282 * 8 6 4 12 12 C 1.50702 * 109.47186 * 119.99953 * 2 1 3 13 13 C 1.31787 * 122.54894 * 60.02404 * 12 2 1 14 14 S 1.75299 * 111.40493 * 179.97438 * 13 12 2 15 15 C 1.75899 * 92.19573 * 0.02562 * 14 13 12 16 16 C 1.39864 * 130.53762 * 180.02562 * 15 14 13 17 17 C 1.37665 * 120.15874 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.92906 * 180.02562 * 17 16 15 19 19 C 1.39042 * 120.13355 * 359.97438 * 17 16 15 20 20 C 1.36080 * 120.56608 * 0.02688 * 19 17 16 21 21 C 1.39738 * 109.68774 * 0.27399 * 15 14 13 22 22 H 1.09006 * 109.47117 * 59.99684 * 1 2 3 23 23 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47134 * 299.99738 * 1 2 3 25 25 H 0.96997 * 119.99583 * 179.97438 * 7 6 4 26 26 H 1.07999 * 124.29811 * 0.02783 * 13 12 2 27 27 H 1.08003 * 119.91976 * 359.97438 * 16 15 14 28 28 H 1.08001 * 119.71513 * 180.02562 * 19 17 16 29 29 H 1.08002 * 119.74903 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7123 12 6 2.0324 -0.7104 1.2305 13 6 1.7454 -1.9705 1.4885 14 16 2.4790 -2.4991 2.9903 15 6 3.2059 -0.9218 3.2691 16 6 4.0102 -0.4641 4.3178 17 6 4.4702 0.8334 4.3211 18 9 5.2473 1.2705 5.3361 19 6 4.1376 1.6946 3.2814 20 6 3.3562 1.2676 2.2523 21 6 2.8652 -0.0556 2.2269 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7094 1.1619 -3.4844 26 1 1.1365 -2.5981 0.8547 27 1 4.2710 -1.1302 5.1270 28 1 4.5025 2.7110 3.2905 29 1 3.1056 1.9478 1.4517 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:44 Heat of formation + Delta-G solvation = -14.788809 kcal Electronic energy + Delta-G solvation = -15373.396454 eV Core-core repulsion = 12687.785963 eV Total energy + Delta-G solvation = -2685.610491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.78623 -39.22319 -35.88076 -33.05753 -31.08299 -30.01997 -28.06440 -25.21451 -23.69678 -22.61852 -21.51017 -18.58717 -18.17600 -16.45544 -16.32062 -15.65754 -15.48604 -15.19730 -14.63770 -13.75051 -13.52267 -13.20365 -12.79632 -12.72046 -12.42653 -12.02258 -11.48721 -11.31038 -11.03407 -10.94678 -10.54989 -10.37527 -10.27487 -10.17157 -9.55100 -9.36883 -8.94285 -8.44708 -8.05878 -7.22058 -6.08852 -4.15928 0.98786 1.33343 1.89250 2.47846 2.80038 3.25513 3.32837 3.36716 3.89268 4.37376 4.42700 4.87898 5.03977 5.17784 5.25373 5.44451 5.73874 6.00556 6.10905 6.20756 6.34094 6.44132 6.71611 6.77844 6.93320 7.00692 7.13314 7.19002 7.62432 7.83396 7.99930 8.28973 8.86242 9.49236 10.96696 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027688 B = 0.006507 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.034137 B = 4301.933998 C = 4714.937270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.091 3.909 3 H 0.038 0.962 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.036 4.036 13 C -0.196 4.196 14 S 0.044 5.956 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.102 3.898 18 F -0.142 7.142 19 C -0.161 4.161 20 C -0.037 4.037 21 C -0.069 4.069 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.010 0.990 25 H 0.262 0.738 26 H 0.167 0.833 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -1.196 10.538 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.046 4.046 13 C -0.329 4.329 14 S 0.308 5.692 15 C -0.232 4.232 16 C -0.149 4.149 17 C 0.080 3.920 18 F -0.121 7.121 19 C -0.182 4.182 20 C -0.057 4.057 21 C -0.078 4.078 22 H 0.106 0.894 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.185 0.815 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.229 -2.510 11.164 11.889 hybrid contribution 0.476 0.832 -1.457 1.744 sum 3.705 -1.677 9.707 10.525 Atomic orbital electron populations 1.21809 0.97285 0.99432 1.00466 1.17674 0.92803 0.95325 0.87203 0.94395 1.21116 1.31441 1.12479 0.89719 0.92378 1.24942 0.94962 0.94956 0.98950 1.69874 1.36529 1.22744 1.23579 0.86568 0.79350 0.79428 0.82576 1.20631 1.21161 1.19848 1.20494 0.94377 0.93517 0.96198 1.24684 1.08792 0.99672 0.99721 1.83734 1.52262 1.10295 1.22897 1.22399 1.03418 0.98616 0.98817 1.20185 1.00794 0.94780 0.99164 1.17335 0.94800 0.92986 0.86882 1.91469 1.72608 1.89932 1.58095 1.20604 1.02554 1.00406 0.94649 1.20749 0.93640 0.94215 0.97069 1.19531 0.99643 0.94366 0.94306 0.89398 0.95240 0.97122 0.92837 0.81534 0.84951 0.84594 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.80 37.16 0.33 -2.71 15 2 C 0.09 2.16 2.56 -92.92 -0.24 1.92 15 3 H 0.04 0.95 6.88 -51.93 -0.36 0.59 15 4 C -0.51 -13.29 8.30 -34.44 -0.29 -13.58 15 5 H 0.06 1.53 7.63 -52.49 -0.40 1.13 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -24.20 11.32 55.43 0.63 -23.57 15 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 15 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 12 C -0.04 -0.76 4.80 -103.65 -0.50 -1.25 15 13 C -0.20 -3.75 9.82 28.84 0.28 -3.47 15 14 S 0.04 0.72 23.23 -107.50 -2.50 -1.78 15 15 C -0.12 -2.01 6.48 -38.41 -0.25 -2.26 15 16 C -0.13 -1.90 10.05 -39.18 -0.39 -2.29 15 17 C 0.10 1.51 7.29 -39.49 -0.29 1.22 15 18 F -0.14 -2.03 17.26 2.25 0.04 -1.99 15 19 C -0.16 -2.35 9.93 -40.06 -0.40 -2.75 15 20 C -0.04 -0.63 9.71 -39.25 -0.38 -1.01 15 21 C -0.07 -1.31 6.02 -105.36 -0.63 -1.94 15 22 H 0.09 2.22 6.07 -51.93 -0.32 1.90 15 23 H 0.03 0.64 7.70 -51.93 -0.40 0.24 15 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 26 H 0.17 3.11 7.88 -52.49 -0.41 2.69 15 27 H 0.13 1.70 8.06 -52.48 -0.42 1.27 15 28 H 0.14 1.62 8.06 -52.49 -0.42 1.19 15 29 H 0.14 2.31 7.15 -52.49 -0.38 1.93 15 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -26.78 267.59 -8.33 -35.12 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.66 Total: -0.87 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -2.85 Total: -26.54 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.57 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.50 Total: -1.78 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.78 -8.33 -35.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds