Wall clock time and date at job start Mon Mar 30 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47078 * 2 1 4 4 C 1.50703 * 109.47214 * 240.00389 * 2 1 3 5 5 H 1.07995 * 119.99634 * 240.00293 * 4 2 1 6 6 C 1.37879 * 120.00020 * 59.99541 * 4 2 1 7 7 N 1.31516 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46781 * 90.00303 * 8 6 4 10 10 H 1.48492 * 109.46969 * 210.00330 * 8 6 4 11 11 H 1.48501 * 109.47085 * 330.00282 * 8 6 4 12 12 C 1.50702 * 109.47186 * 119.99953 * 2 1 3 13 13 C 1.31787 * 122.54894 * 60.02404 * 12 2 1 14 14 S 1.75299 * 111.40493 * 179.97438 * 13 12 2 15 15 C 1.75899 * 92.19573 * 0.02562 * 14 13 12 16 16 C 1.39864 * 130.53762 * 180.02562 * 15 14 13 17 17 C 1.37665 * 120.15874 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.92906 * 180.02562 * 17 16 15 19 19 C 1.39042 * 120.13355 * 359.97438 * 17 16 15 20 20 C 1.36080 * 120.56608 * 0.02688 * 19 17 16 21 21 C 1.39738 * 109.68774 * 0.27399 * 15 14 13 22 22 H 1.09006 * 109.47117 * 59.99684 * 1 2 3 23 23 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47134 * 299.99738 * 1 2 3 25 25 H 0.96997 * 119.99583 * 179.97438 * 7 6 4 26 26 H 1.07999 * 124.29811 * 0.02783 * 13 12 2 27 27 H 1.08003 * 119.91976 * 359.97438 * 16 15 14 28 28 H 1.08001 * 119.71513 * 180.02562 * 19 17 16 29 29 H 1.08002 * 119.74903 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7123 12 6 2.0324 -0.7104 1.2305 13 6 1.7454 -1.9705 1.4885 14 16 2.4790 -2.4991 2.9903 15 6 3.2059 -0.9218 3.2691 16 6 4.0102 -0.4641 4.3178 17 6 4.4702 0.8334 4.3211 18 9 5.2473 1.2705 5.3361 19 6 4.1376 1.6946 3.2814 20 6 3.3562 1.2676 2.2523 21 6 2.8652 -0.0556 2.2269 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7094 1.1619 -3.4844 26 1 1.1365 -2.5981 0.8547 27 1 4.2710 -1.1302 5.1270 28 1 4.5025 2.7110 3.2905 29 1 3.1056 1.9478 1.4517 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260112024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:43 Heat of formation + Delta-G solvation = -26.612106 kcal Electronic energy + Delta-G solvation = -15373.909150 eV Core-core repulsion = 12687.785963 eV Total energy + Delta-G solvation = -2686.123187 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.94014 -40.55322 -37.45213 -34.84245 -32.48100 -31.63004 -29.49091 -27.21152 -25.18175 -23.89824 -23.07028 -20.15970 -19.44550 -18.20912 -17.75342 -17.01850 -16.70221 -16.64308 -16.26257 -15.17789 -14.97568 -14.66803 -14.34027 -14.13019 -13.84449 -13.60217 -13.17467 -12.95415 -12.82035 -12.65885 -12.25974 -12.09368 -11.77019 -11.66390 -11.27353 -11.03969 -10.53466 -10.45511 -9.36840 -8.56605 -8.09091 -6.23243 -0.33000 0.09873 0.58940 1.05689 1.35183 1.41968 1.44769 1.53377 2.42851 2.58767 3.17852 3.22144 3.64992 3.79288 3.97893 4.19855 4.46199 4.62479 4.69520 4.85328 4.92551 5.05608 5.08552 5.14983 5.20131 5.38551 5.52730 5.63132 5.79086 5.99425 6.05164 6.33626 6.84056 7.44519 8.94407 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027688 B = 0.006507 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.034137 B = 4301.933998 C = 4714.937270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.092 3.908 3 H 0.015 0.985 4 C -0.521 4.521 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.272 1.272 12 C -0.061 4.061 13 C -0.207 4.207 14 S 0.103 5.897 15 C -0.131 4.131 16 C -0.121 4.121 17 C 0.106 3.894 18 F -0.135 7.135 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.096 4.096 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -1.852 11.934 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 H 0.033 0.967 4 C -0.559 4.559 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.197 1.197 12 C -0.071 4.071 13 C -0.340 4.340 14 S 0.367 5.633 15 C -0.247 4.247 16 C -0.145 4.145 17 C 0.085 3.915 18 F -0.113 7.113 19 C -0.168 4.168 20 C -0.073 4.073 21 C -0.105 4.105 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.182 0.818 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.298 -3.172 12.573 13.660 hybrid contribution 0.185 1.055 -1.791 2.087 sum 4.483 -2.117 10.782 11.867 Atomic orbital electron populations 1.21650 0.97149 0.99351 0.99836 1.17484 0.92966 0.94229 0.88249 0.96714 1.21368 1.31209 1.12322 0.91023 0.93167 1.25632 0.95223 0.95634 1.01514 1.69990 1.37425 1.23823 1.24062 0.85665 0.78814 0.78446 0.79409 1.20076 1.20896 1.19704 1.20301 0.96315 0.94362 0.96146 1.24808 1.08470 0.99305 1.01406 1.83415 1.50933 1.08959 1.19950 1.22611 1.04072 0.99000 0.99016 1.20452 0.99644 0.95328 0.99040 1.17376 0.94377 0.92952 0.86844 1.91497 1.72298 1.89831 1.57701 1.20848 1.00910 1.01663 0.93424 1.20790 0.94805 0.93726 0.97993 1.19578 1.00576 0.95610 0.94725 0.91894 0.94921 0.95706 0.92852 0.81839 0.82275 0.81767 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.80 71.98 0.63 -5.12 15 2 C 0.09 4.47 2.56 -12.28 -0.03 4.44 15 3 H 0.01 0.77 6.88 -2.39 -0.02 0.76 15 4 C -0.52 -27.76 8.30 25.60 0.21 -27.55 15 5 H 0.05 2.69 7.63 -2.91 -0.02 2.66 15 6 C 0.02 1.02 5.30 84.65 0.45 1.47 15 7 N -0.91 -50.82 11.32 21.45 0.24 -50.58 15 8 Si 0.95 42.61 29.54 68.60 2.03 44.64 15 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 12 C -0.06 -2.57 4.80 -18.77 -0.09 -2.66 15 13 C -0.21 -7.85 9.82 67.06 0.66 -7.19 15 14 S 0.10 3.14 23.23 -56.49 -1.31 1.83 15 15 C -0.13 -4.27 6.48 23.03 0.15 -4.13 15 16 C -0.12 -3.30 10.05 22.53 0.23 -3.08 15 17 C 0.11 2.85 7.29 22.33 0.16 3.01 15 18 F -0.13 -3.37 17.26 44.97 0.78 -2.59 15 19 C -0.15 -3.99 9.93 21.96 0.22 -3.77 15 20 C -0.05 -1.78 9.71 22.49 0.22 -1.56 15 21 C -0.10 -3.60 6.02 -20.34 -0.12 -3.72 15 22 H 0.06 3.27 6.07 -2.38 -0.01 3.26 15 23 H 0.03 1.45 7.70 -2.39 -0.02 1.44 15 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.26 13.91 8.31 -92.71 -0.77 13.14 15 26 H 0.16 6.12 7.88 -2.91 -0.02 6.10 15 27 H 0.16 3.43 8.06 -2.91 -0.02 3.41 15 28 H 0.16 3.43 8.06 -2.91 -0.02 3.40 15 29 H 0.14 4.55 7.15 -2.91 -0.02 4.53 15 Total: -1.00 -56.86 267.59 5.59 -51.27 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.17 Total: 5.28 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 2.68 Total: -49.85 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.24 Total: -50.58 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -56.86 5.59 -51.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.661 kcal (2) G-P(sol) polarization free energy of solvation -56.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds