Wall clock time and date at job start Mon Mar 30 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.31790 * 124.29272 * 239.72327 * 12 2 1 14 14 C 1.45414 * 114.88359 * 179.80360 * 13 12 2 15 15 C 1.39704 * 111.84887 * 0.46440 * 14 13 12 16 16 C 1.39865 * 119.85316 * 179.74326 * 15 14 13 17 17 C 1.37458 * 120.36944 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.22107 * 0.02562 * 17 16 15 19 19 C 1.37341 * 120.41288 * 359.95605 * 18 17 16 20 20 F 1.35104 * 119.85551 * 180.02562 * 19 18 17 21 21 S 1.75294 * 124.29944 * 60.01934 * 12 2 1 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.07997 * 122.56000 * 359.97438 * 13 12 2 27 27 H 1.07992 * 119.81150 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.88979 * 179.97438 * 17 16 15 29 29 H 1.08007 * 119.79799 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 2.7975 -0.1550 2.1484 14 6 3.1590 -1.0279 3.2538 15 6 2.6166 -2.3067 3.1053 16 6 2.8645 -3.2849 4.0737 17 6 3.6388 -2.9951 5.1719 18 6 4.1814 -1.7273 5.3292 19 6 3.9515 -0.7513 4.3907 20 9 4.4857 0.4788 4.5548 21 16 1.6794 -2.3833 1.6183 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.9030 -0.5275 -4.4376 26 1 3.1283 0.8711 2.0860 27 1 2.4452 -4.2734 3.9581 28 1 3.8249 -3.7562 5.9152 29 1 4.7885 -1.5069 6.1949 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260115597.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:08 Heat of formation + Delta-G solvation = -7.966639 kcal Electronic energy + Delta-G solvation = -15292.585233 eV Core-core repulsion = 12607.270574 eV Total energy + Delta-G solvation = -2685.314659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.72228 -39.04889 -36.12594 -33.60176 -31.48882 -30.29916 -28.34406 -25.20245 -23.72402 -22.84508 -21.00905 -19.63142 -17.89018 -16.88303 -16.25782 -15.80200 -15.48095 -15.24882 -14.81109 -14.22855 -13.77567 -13.12383 -12.94696 -12.87936 -12.57748 -12.31874 -11.76357 -11.50450 -11.37412 -11.16358 -10.70322 -10.47659 -10.33298 -10.03064 -9.57064 -9.35435 -9.13439 -8.68725 -8.08381 -7.31628 -6.18772 -4.21059 0.95205 1.18841 1.90904 2.50414 2.69432 3.19324 3.29795 3.32305 3.69998 4.29654 4.36339 4.76520 4.86504 5.13262 5.13356 5.33065 5.55033 5.81159 5.94314 6.08222 6.16162 6.19758 6.33497 6.35040 6.39563 6.68452 6.72853 6.80906 6.93918 7.22603 7.53982 8.35122 8.83672 9.40144 10.93578 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035933 B = 0.006373 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.050591 B = 4392.600217 C = 4734.631972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.050 0.950 4 C -0.519 4.519 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.265 1.265 12 C -0.072 4.072 13 C -0.167 4.167 14 C -0.090 4.090 15 C -0.140 4.140 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.161 4.161 19 C 0.125 3.875 20 F -0.139 7.139 21 S 0.126 5.874 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.266 0.734 26 H 0.142 0.858 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -2.356 15.441 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.041 3.959 3 H 0.068 0.932 4 C -0.557 4.557 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.190 1.190 12 C -0.188 4.188 13 C -0.195 4.195 14 C -0.100 4.100 15 C -0.256 4.256 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.183 4.183 19 C 0.105 3.895 20 F -0.117 7.117 21 S 0.392 5.608 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.658 -3.394 14.431 14.839 hybrid contribution 0.433 2.129 0.407 2.211 sum -0.226 -1.265 14.838 14.894 Atomic orbital electron populations 1.22217 0.97721 1.01282 0.99304 1.18124 0.92236 0.96082 0.89441 0.93194 1.20906 1.32998 1.13970 0.87818 0.90153 1.24953 0.95519 0.96588 0.95647 1.69873 1.44937 1.40087 0.98008 0.86870 0.80643 0.83664 0.77224 1.20350 1.22225 1.19027 1.24394 0.99069 0.95974 0.99377 1.20644 1.03931 1.00971 0.93933 1.19260 1.00783 0.94168 0.95770 1.22880 1.04749 0.96604 1.01340 1.20463 0.99549 0.98030 0.93104 1.20700 0.97514 0.95875 0.97634 1.20784 1.04222 0.93448 0.99800 1.17527 0.96563 0.80559 0.94892 1.91468 1.84155 1.40760 1.95357 1.84305 1.51913 1.11368 1.13172 0.93418 0.92539 0.94563 0.92355 0.84052 0.85343 0.84847 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.58 37.16 0.32 -2.79 15 2 C 0.06 1.42 2.23 -92.92 -0.21 1.21 15 3 H 0.05 1.16 7.12 -51.93 -0.37 0.79 15 4 C -0.52 -14.10 9.00 -34.44 -0.31 -14.41 15 5 H 0.08 2.39 7.98 -52.49 -0.42 1.97 15 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 15 7 N -0.89 -26.55 13.96 55.43 0.77 -25.78 15 8 Si 0.89 21.17 24.37 -169.99 -4.14 17.03 15 9 H -0.28 -6.42 6.87 56.52 0.39 -6.03 15 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 11 H -0.27 -6.04 6.53 56.52 0.37 -5.67 15 12 C -0.07 -1.49 4.95 -36.20 -0.18 -1.67 15 13 C -0.17 -3.23 10.11 -38.62 -0.39 -3.62 15 14 C -0.09 -1.59 6.04 -105.32 -0.64 -2.22 15 15 C -0.14 -2.34 6.48 -38.43 -0.25 -2.59 15 16 C -0.09 -1.18 10.06 -39.26 -0.39 -1.57 15 17 C -0.10 -1.10 10.03 -39.66 -0.40 -1.49 15 18 C -0.16 -2.02 9.97 -39.70 -0.40 -2.42 15 19 C 0.13 1.97 7.36 -38.74 -0.28 1.68 15 20 F -0.14 -2.21 17.22 2.25 0.04 -2.17 15 21 S 0.13 2.33 22.74 -107.50 -2.44 -0.12 15 22 H 0.05 1.04 3.27 -51.93 -0.17 0.87 15 23 H 0.06 1.15 7.93 -51.93 -0.41 0.74 15 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 26 H 0.14 2.58 8.06 -52.49 -0.42 2.16 15 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -29.30 264.04 -7.69 -36.98 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.67 Total: -2.06 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -3.22 Total: -27.87 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.44 Total: -0.12 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.30 -7.69 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115597.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.016 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds