Wall clock time and date at job start Mon Mar 30 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 C 1.31790 * 124.29272 * 239.72327 * 12 2 1 14 14 C 1.45414 * 114.88359 * 179.80360 * 13 12 2 15 15 C 1.39704 * 111.84887 * 0.46440 * 14 13 12 16 16 C 1.39865 * 119.85316 * 179.74326 * 15 14 13 17 17 C 1.37458 * 120.36944 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.22107 * 0.02562 * 17 16 15 19 19 C 1.37341 * 120.41288 * 359.95605 * 18 17 16 20 20 F 1.35104 * 119.85551 * 180.02562 * 19 18 17 21 21 S 1.75294 * 124.29944 * 60.01934 * 12 2 1 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.07997 * 122.56000 * 359.97438 * 13 12 2 27 27 H 1.07992 * 119.81150 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.88979 * 179.97438 * 17 16 15 29 29 H 1.08007 * 119.79799 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 6 2.7975 -0.1550 2.1484 14 6 3.1590 -1.0279 3.2538 15 6 2.6166 -2.3067 3.1053 16 6 2.8645 -3.2849 4.0737 17 6 3.6388 -2.9951 5.1719 18 6 4.1814 -1.7273 5.3292 19 6 3.9515 -0.7513 4.3907 20 9 4.4857 0.4788 4.5548 21 16 1.6794 -2.3833 1.6183 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.9030 -0.5275 -4.4376 26 1 3.1283 0.8711 2.0860 27 1 2.4452 -4.2734 3.9581 28 1 3.8249 -3.7562 5.9152 29 1 4.7885 -1.5069 6.1949 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260115597.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:08 Heat of formation + Delta-G solvation = -24.343677 kcal Electronic energy + Delta-G solvation = -15293.295395 eV Core-core repulsion = 12607.270574 eV Total energy + Delta-G solvation = -2686.024821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90883 -40.24603 -37.68205 -35.25048 -33.38035 -31.41094 -29.70421 -27.17574 -25.03375 -24.18216 -22.42370 -21.12328 -19.18168 -18.82368 -17.55028 -17.06270 -16.81506 -16.65942 -16.31582 -15.55679 -15.26811 -14.83936 -14.42243 -14.15756 -14.06874 -13.93276 -13.31871 -13.02181 -12.72733 -12.63174 -12.29597 -12.01468 -11.92240 -11.61502 -11.39089 -11.20967 -10.78657 -10.42386 -9.41860 -8.64505 -8.33642 -6.40197 -0.28203 0.07659 0.56810 1.09276 1.29104 1.31903 1.35424 1.45121 2.28656 2.56448 3.01170 3.23277 3.51897 3.91825 3.96383 4.15772 4.32192 4.47871 4.55395 4.62358 4.71191 4.86986 4.95384 5.02036 5.09214 5.22102 5.30071 5.33207 5.47365 5.59884 5.86273 6.21179 6.64808 7.24447 8.82403 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035933 B = 0.006373 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.050591 B = 4392.600217 C = 4734.631972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 H 0.046 0.954 4 C -0.518 4.518 5 H 0.038 0.962 6 C 0.019 3.981 7 N -0.943 5.943 8 Si 0.947 3.053 9 H -0.262 1.262 10 H -0.297 1.297 11 H -0.246 1.246 12 C -0.109 4.109 13 C -0.162 4.162 14 C -0.122 4.122 15 C -0.143 4.143 16 C -0.094 4.094 17 C -0.071 4.071 18 C -0.145 4.145 19 C 0.105 3.895 20 F -0.146 7.146 21 S 0.103 5.897 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.268 0.732 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.184 0.816 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -2.604 18.749 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.042 3.958 3 H 0.064 0.936 4 C -0.556 4.556 5 H 0.056 0.944 6 C -0.179 4.179 7 N -0.582 5.582 8 Si 0.774 3.226 9 H -0.188 1.188 10 H -0.225 1.225 11 H -0.170 1.170 12 C -0.225 4.225 13 C -0.190 4.190 14 C -0.131 4.131 15 C -0.259 4.259 16 C -0.116 4.116 17 C -0.092 4.092 18 C -0.166 4.166 19 C 0.084 3.916 20 F -0.124 7.124 21 S 0.369 5.631 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.173 0.827 28 H 0.202 0.798 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.815 -3.638 17.766 18.152 hybrid contribution 0.643 2.067 -0.404 2.202 sum -0.172 -1.571 17.361 17.433 Atomic orbital electron populations 1.22122 0.96008 1.01619 1.00338 1.17966 0.93666 0.95466 0.88710 0.93595 1.21104 1.31809 1.12773 0.89933 0.94369 1.25810 0.97063 0.99894 0.95163 1.70024 1.47183 1.42342 0.98674 0.85872 0.79304 0.79928 0.77541 1.18767 1.22500 1.16981 1.24137 1.01468 0.97354 0.99538 1.20838 1.02584 1.01301 0.94293 1.19347 1.02793 0.94462 0.96511 1.23023 1.04607 0.97288 1.01002 1.20943 0.99629 0.98417 0.92637 1.21317 0.94483 0.96249 0.97137 1.21309 1.02981 0.92829 0.99484 1.17824 0.97176 0.81271 0.95299 1.91450 1.84262 1.41343 1.95370 1.84135 1.53315 1.10381 1.15282 0.93967 0.92687 0.91665 0.92283 0.84046 0.82679 0.79831 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.58 71.98 0.62 -5.34 15 2 C 0.06 2.92 2.23 -12.28 -0.03 2.89 15 3 H 0.05 2.15 7.12 -2.39 -0.02 2.14 15 4 C -0.52 -29.36 9.00 25.60 0.23 -29.13 15 5 H 0.04 2.42 7.98 -2.92 -0.02 2.39 15 6 C 0.02 1.08 5.45 84.65 0.46 1.54 15 7 N -0.94 -58.43 13.96 21.45 0.30 -58.13 15 8 Si 0.95 44.02 24.37 68.60 1.67 45.69 15 9 H -0.26 -11.48 6.87 99.48 0.68 -10.79 15 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 15 11 H -0.25 -10.56 6.53 99.48 0.65 -9.91 15 12 C -0.11 -4.65 4.95 24.93 0.12 -4.53 15 13 C -0.16 -6.35 10.11 23.36 0.24 -6.12 15 14 C -0.12 -4.23 6.04 -20.32 -0.12 -4.35 15 15 C -0.14 -4.62 6.48 23.02 0.15 -4.47 15 16 C -0.09 -2.14 10.06 22.48 0.23 -1.91 15 17 C -0.07 -1.22 10.03 22.22 0.22 -1.00 15 18 C -0.15 -2.96 9.97 22.19 0.22 -2.74 15 19 C 0.11 3.07 7.36 22.82 0.17 3.24 15 20 F -0.15 -4.43 17.22 44.97 0.77 -3.66 15 21 S 0.10 3.88 22.74 -56.49 -1.28 2.60 15 22 H 0.04 1.77 3.27 -2.39 -0.01 1.76 15 23 H 0.05 2.25 7.93 -2.39 -0.02 2.23 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 26 H 0.14 5.31 8.06 -2.91 -0.02 5.28 15 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 28 H 0.18 1.44 8.06 -2.91 -0.02 1.41 15 29 H 0.17 2.29 8.06 -2.91 -0.02 2.26 15 Total: -1.00 -67.10 264.04 5.06 -62.05 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.09 Total: 3.37 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 2.51 Total: -51.91 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.77 Total: -3.66 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.28 Total: 2.60 kcal Total: -67.10 5.06 -62.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115597.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.703 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds