Wall clock time and date at job start Mon Mar 30 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 H 1.07998 * 119.99629 * 120.00096 * 4 2 1 6 6 C 1.37875 * 119.99955 * 300.00667 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47474 * 89.99404 * 8 6 4 10 10 H 1.48504 * 109.47121 * 209.99526 * 8 6 4 11 11 H 1.48499 * 109.47026 * 329.99368 * 8 6 4 12 12 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 13 13 C 1.31788 * 124.30090 * 119.99966 * 12 2 1 14 14 C 1.45408 * 114.89039 * 180.02562 * 13 12 2 15 15 C 1.39705 * 111.84668 * 0.02562 * 14 13 12 16 16 C 1.39869 * 119.85282 * 180.02562 * 15 14 13 17 17 C 1.37455 * 120.37261 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.21715 * 359.97438 * 17 16 15 19 19 C 1.37346 * 120.41188 * 0.02562 * 18 17 16 20 20 F 1.35103 * 119.85007 * 179.97438 * 19 18 17 21 21 S 1.75299 * 124.29538 * 299.70005 * 12 2 1 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 25 25 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 26 26 H 1.08002 * 122.55666 * 0.02562 * 13 12 2 27 27 H 1.08001 * 119.81254 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.89312 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.79345 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 6 2.0324 -0.7104 -1.2304 13 6 2.7932 -0.1532 -2.1510 14 6 3.1589 -1.0274 -3.2540 15 6 2.6152 -2.3058 -3.1063 16 6 2.8627 -3.2838 -4.0752 17 6 3.6377 -2.9942 -5.1729 18 6 4.1816 -1.7266 -5.3293 19 6 3.9518 -0.7507 -4.3905 20 9 4.4872 0.4789 -4.5539 21 16 1.6852 -2.3850 -1.6151 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7093 1.1617 3.4844 26 1 3.1201 0.8744 -2.0909 27 1 2.4418 -4.2717 -3.9606 28 1 3.8242 -3.7553 -5.9160 29 1 4.7892 -1.5064 -6.1946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260115608.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:09 Heat of formation + Delta-G solvation = -17.024206 kcal Electronic energy + Delta-G solvation = -15247.612953 eV Core-core repulsion = 12561.905528 eV Total energy + Delta-G solvation = -2685.707425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.66981 -38.98174 -35.91835 -33.58079 -31.00310 -30.22899 -27.93288 -25.26152 -23.61285 -22.69850 -20.89192 -19.55415 -17.87092 -16.63045 -16.11033 -15.68895 -15.42174 -15.16787 -14.65752 -14.13933 -13.60927 -13.10375 -12.87634 -12.69821 -12.32598 -11.77008 -11.40982 -11.30849 -11.16325 -10.99478 -10.62616 -10.43460 -10.28228 -10.11082 -9.78816 -9.24674 -9.04147 -8.49180 -7.99179 -7.25790 -6.12941 -4.21235 1.02179 1.23405 1.98293 2.60124 2.78666 3.25077 3.31870 3.35923 3.75810 4.34456 4.41952 4.84404 4.90343 5.18612 5.19032 5.39365 5.65544 5.92740 6.10731 6.15190 6.29500 6.39046 6.61022 6.70355 6.80277 6.95511 7.03168 7.07970 7.52822 7.72605 7.93434 8.19599 8.80389 9.44597 10.92770 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.006123 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.086858 B = 4571.533005 C = 4796.280174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.050 0.950 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C -0.071 4.071 13 C -0.175 4.175 14 C -0.087 4.087 15 C -0.141 4.141 16 C -0.089 4.089 17 C -0.099 4.099 18 C -0.161 4.161 19 C 0.124 3.876 20 F -0.139 7.139 21 S 0.113 5.887 22 H 0.031 0.969 23 H 0.091 0.909 24 H 0.013 0.987 25 H 0.263 0.737 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -5.958 -12.384 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 H 0.068 0.932 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C -0.187 4.187 13 C -0.202 4.202 14 C -0.097 4.097 15 C -0.257 4.257 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.183 4.183 19 C 0.103 3.897 20 F -0.118 7.118 21 S 0.379 5.621 22 H 0.050 0.950 23 H 0.110 0.890 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.159 0.841 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.932 -6.870 -11.438 13.481 hybrid contribution 1.308 0.962 0.134 1.629 sum 3.239 -5.908 -11.304 13.160 Atomic orbital electron populations 1.21841 0.96882 0.99667 1.00921 1.17718 0.93186 0.95342 0.86389 0.93191 1.21078 1.31972 1.12789 0.89607 0.92073 1.24934 0.94752 0.94925 0.99036 1.69872 1.36189 1.22682 1.23785 0.86517 0.78666 0.80189 0.82291 1.20517 1.21062 1.19671 1.24916 0.98124 0.95501 1.00166 1.20661 1.04550 1.00909 0.94105 1.19310 1.00419 0.94209 0.95765 1.22863 1.04783 0.96654 1.01428 1.20453 0.99546 0.97993 0.93160 1.20680 0.97744 0.95886 0.97675 1.20775 1.04261 0.93471 0.99772 1.17536 0.96683 0.80557 0.94938 1.91466 1.84109 1.40818 1.95369 1.84230 1.52742 1.12001 1.13152 0.95030 0.89011 0.96754 0.92680 0.84118 0.85460 0.84939 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.88 37.16 0.33 -2.84 15 2 C 0.09 2.30 2.64 -92.92 -0.24 2.05 15 3 H 0.05 1.31 8.06 -51.93 -0.42 0.89 15 4 C -0.52 -13.73 8.42 -34.44 -0.29 -14.02 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 15 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 15 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 12 C -0.07 -1.54 4.95 -36.20 -0.18 -1.72 15 13 C -0.18 -3.54 10.11 -38.62 -0.39 -3.93 15 14 C -0.09 -1.59 6.04 -105.33 -0.64 -2.23 15 15 C -0.14 -2.44 6.48 -38.42 -0.25 -2.69 15 16 C -0.09 -1.21 10.06 -39.26 -0.39 -1.61 15 17 C -0.10 -1.17 10.03 -39.65 -0.40 -1.56 15 18 C -0.16 -2.10 9.97 -39.69 -0.40 -2.49 15 19 C 0.12 2.01 7.36 -38.74 -0.28 1.73 15 20 F -0.14 -2.30 17.22 2.25 0.04 -2.26 15 21 S 0.11 2.14 22.75 -107.50 -2.45 -0.31 15 22 H 0.03 0.71 7.94 -51.93 -0.41 0.29 15 23 H 0.09 2.35 6.07 -51.93 -0.32 2.03 15 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.14 2.74 8.06 -52.49 -0.42 2.32 15 27 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 15 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 LS Contribution 270.86 15.07 4.08 4.08 Total: -1.00 -27.68 270.86 -8.75 -36.43 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -2.80 Total: -2.27 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.23 Total: -27.65 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.45 Total: -0.31 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.68 -8.75 -36.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115608.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.407 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds