Wall clock time and date at job start Mon Mar 30 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 H 1.07998 * 119.99629 * 120.00096 * 4 2 1 6 6 C 1.37875 * 119.99955 * 300.00667 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47474 * 89.99404 * 8 6 4 10 10 H 1.48504 * 109.47121 * 209.99526 * 8 6 4 11 11 H 1.48499 * 109.47026 * 329.99368 * 8 6 4 12 12 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 13 13 C 1.31788 * 124.30090 * 119.99966 * 12 2 1 14 14 C 1.45408 * 114.89039 * 180.02562 * 13 12 2 15 15 C 1.39705 * 111.84668 * 0.02562 * 14 13 12 16 16 C 1.39869 * 119.85282 * 180.02562 * 15 14 13 17 17 C 1.37455 * 120.37261 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.21715 * 359.97438 * 17 16 15 19 19 C 1.37346 * 120.41188 * 0.02562 * 18 17 16 20 20 F 1.35103 * 119.85007 * 179.97438 * 19 18 17 21 21 S 1.75299 * 124.29538 * 299.70005 * 12 2 1 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 25 25 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 26 26 H 1.08002 * 122.55666 * 0.02562 * 13 12 2 27 27 H 1.08001 * 119.81254 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.89312 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.79345 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 6 2.0324 -0.7104 -1.2304 13 6 2.7932 -0.1532 -2.1510 14 6 3.1589 -1.0274 -3.2540 15 6 2.6152 -2.3058 -3.1063 16 6 2.8627 -3.2838 -4.0752 17 6 3.6377 -2.9942 -5.1729 18 6 4.1816 -1.7266 -5.3293 19 6 3.9518 -0.7507 -4.3905 20 9 4.4872 0.4789 -4.5539 21 16 1.6852 -2.3850 -1.6151 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7093 1.1617 3.4844 26 1 3.1201 0.8744 -2.0909 27 1 2.4418 -4.2717 -3.9606 28 1 3.8242 -3.7553 -5.9160 29 1 4.7892 -1.5064 -6.1946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260115608.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:09 Heat of formation + Delta-G solvation = -30.217627 kcal Electronic energy + Delta-G solvation = -15248.185062 eV Core-core repulsion = 12561.905528 eV Total energy + Delta-G solvation = -2686.279534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90571 -40.22203 -37.54043 -35.27870 -32.79872 -31.38794 -29.41122 -27.30093 -24.94198 -24.09576 -22.39355 -21.10068 -19.20416 -18.46325 -17.47255 -17.00530 -16.69995 -16.66484 -16.27319 -15.47931 -15.15626 -14.72382 -14.29362 -14.07859 -13.80543 -13.50769 -13.03333 -12.88952 -12.70119 -12.57926 -12.33454 -12.18458 -11.87221 -11.78129 -11.51963 -11.07033 -10.54593 -10.40478 -9.38716 -8.63030 -8.16871 -6.32338 -0.25451 0.08576 0.59588 1.11835 1.33063 1.40162 1.42041 1.52055 2.39803 2.57845 3.11497 3.25205 3.58047 3.92801 3.98619 4.33268 4.35604 4.61102 4.71093 4.81379 4.91775 5.00018 5.07340 5.13575 5.29895 5.33051 5.34224 5.52011 5.73160 5.87369 5.93433 6.19859 6.73916 7.36274 8.87951 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.006123 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.086858 B = 4571.533005 C = 4796.280174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 H 0.017 0.983 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.267 1.267 12 C -0.109 4.109 13 C -0.172 4.172 14 C -0.120 4.120 15 C -0.145 4.145 16 C -0.091 4.091 17 C -0.073 4.073 18 C -0.144 4.144 19 C 0.101 3.899 20 F -0.148 7.148 21 S 0.108 5.892 22 H 0.034 0.966 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.132 0.868 27 H 0.158 0.842 28 H 0.185 0.815 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -8.444 -14.694 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 H 0.035 0.965 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.191 1.191 12 C -0.225 4.225 13 C -0.201 4.201 14 C -0.129 4.129 15 C -0.261 4.261 16 C -0.114 4.114 17 C -0.093 4.093 18 C -0.165 4.165 19 C 0.081 3.919 20 F -0.126 7.126 21 S 0.373 5.627 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.175 0.825 28 H 0.203 0.797 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.019 -9.352 -13.755 16.905 hybrid contribution 1.059 1.699 0.630 2.098 sum 4.077 -7.654 -13.124 15.731 Atomic orbital electron populations 1.21663 0.96483 0.99632 1.00343 1.17484 0.93596 0.93853 0.87610 0.96500 1.21314 1.31892 1.12721 0.90813 0.92718 1.25695 0.94952 0.95616 1.01774 1.69993 1.37069 1.23796 1.24393 0.85575 0.78145 0.79252 0.78901 1.20238 1.20417 1.19091 1.24530 1.00426 0.97534 0.99976 1.20799 1.03565 1.00945 0.94773 1.19346 1.02601 0.94532 0.96416 1.23032 1.04590 0.97218 1.01259 1.20951 0.99488 0.98416 0.92527 1.21320 0.94611 0.96185 0.97206 1.21307 1.02987 0.92853 0.99361 1.17862 0.97379 0.81278 0.95425 1.91443 1.84248 1.41532 1.95393 1.83938 1.53898 1.09795 1.15026 0.94651 0.91354 0.95358 0.92592 0.85050 0.82465 0.79743 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.88 71.98 0.64 -5.41 15 2 C 0.09 4.89 2.64 -12.29 -0.03 4.86 15 3 H 0.02 0.96 8.06 -2.39 -0.02 0.94 15 4 C -0.53 -29.19 8.42 25.60 0.22 -28.97 15 5 H 0.05 3.01 7.74 -2.91 -0.02 2.99 15 6 C 0.02 1.05 5.30 84.65 0.45 1.50 15 7 N -0.91 -52.06 11.32 21.45 0.24 -51.82 15 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 15 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 12 C -0.11 -4.92 4.95 24.93 0.12 -4.80 15 13 C -0.17 -7.30 10.11 23.36 0.24 -7.06 15 14 C -0.12 -4.35 6.04 -20.32 -0.12 -4.47 15 15 C -0.15 -4.77 6.48 23.02 0.15 -4.62 15 16 C -0.09 -2.10 10.06 22.48 0.23 -1.87 15 17 C -0.07 -1.27 10.03 22.22 0.22 -1.05 15 18 C -0.14 -3.06 9.97 22.20 0.22 -2.84 15 19 C 0.10 3.11 7.36 22.82 0.17 3.27 15 20 F -0.15 -4.76 17.22 44.97 0.77 -3.99 15 21 S 0.11 4.11 22.75 -56.49 -1.28 2.83 15 22 H 0.03 1.64 7.94 -2.39 -0.02 1.62 15 23 H 0.07 3.65 6.07 -2.38 -0.01 3.64 15 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 26 H 0.13 5.54 8.06 -2.91 -0.02 5.51 15 27 H 0.16 2.69 8.06 -2.91 -0.02 2.66 15 28 H 0.19 1.47 8.06 -2.91 -0.02 1.44 15 29 H 0.17 2.41 8.06 -2.91 -0.02 2.39 15 Total: -1.00 -62.78 270.86 5.42 -57.37 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.16 Total: 1.71 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 2.49 Total: -51.45 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.24 Total: -51.82 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.99 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.28 Total: 2.83 kcal Total: -62.78 5.42 -57.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115608.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -62.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds