Wall clock time and date at job start Mon Mar 30 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99857 * 2 1 4 4 H 1.48501 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46797 * 299.99691 * 3 2 1 6 6 H 1.48492 * 109.47240 * 59.99952 * 3 2 1 7 7 C 1.37874 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99858 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.31824 * 122.55931 * 264.97393 * 11 10 9 13 13 S 1.75292 * 111.39955 * 180.02562 * 12 11 10 14 14 C 1.75936 * 92.19649 * 0.02562 * 13 12 11 15 15 C 1.39827 * 130.46133 * 180.02562 * 14 13 12 16 16 C 1.37429 * 120.36933 * 179.97438 * 15 14 13 17 17 C 1.39048 * 120.17101 * 0.03690 * 16 15 14 18 18 F 1.35095 * 119.80362 * 179.97438 * 17 16 15 19 19 C 1.37264 * 120.38978 * 0.22287 * 17 16 15 20 20 C 1.39702 * 109.66495 * 359.97438 * 14 13 12 21 21 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46640 * 59.99840 * 9 7 2 23 23 H 1.08997 * 109.46712 * 300.00019 * 9 7 2 24 24 H 1.08999 * 109.47310 * 59.99769 * 10 9 7 25 25 H 1.09000 * 109.46937 * 300.00367 * 10 9 7 26 26 H 1.08007 * 124.30085 * 0.04734 * 12 11 10 27 27 H 1.08002 * 119.82128 * 359.97438 * 15 14 13 28 28 H 1.07994 * 119.91236 * 180.02562 * 16 15 14 29 29 H 1.08000 * 119.84072 * 179.73285 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0025 12 6 1.2209 -5.6294 1.1096 13 16 0.3361 -7.1046 0.7723 14 6 0.3430 -6.7929 -0.9592 15 6 -0.1914 -7.5351 -2.0169 16 6 -0.0648 -7.0907 -3.3112 17 6 0.5977 -5.8978 -3.5789 18 9 0.7183 -5.4683 -4.8541 19 6 1.1342 -5.1568 -2.5556 20 6 1.0090 -5.5925 -1.2182 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8713 -3.6040 0.8922 25 1 2.8726 -3.6047 -0.8877 26 1 1.5074 -5.3043 2.0989 27 1 -0.7066 -8.4627 -1.8157 28 1 -0.4808 -7.6696 -4.1225 29 1 1.6507 -4.2338 -2.7741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:11 Heat of formation + Delta-G solvation = -20.997084 kcal Electronic energy + Delta-G solvation = -15099.613565 eV Core-core repulsion = 12413.733863 eV Total energy + Delta-G solvation = -2685.879702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.76028 -39.37610 -35.85966 -33.20392 -30.92741 -30.53677 -28.81128 -25.46984 -23.24891 -22.70318 -21.31597 -19.16965 -17.95389 -16.69157 -16.44159 -16.06058 -15.47675 -15.25382 -14.51090 -13.97125 -13.75500 -13.41764 -13.29905 -12.77077 -12.38303 -12.29991 -11.93183 -11.45498 -11.10750 -10.97664 -10.74090 -10.55440 -10.48976 -9.92284 -9.69142 -9.28845 -9.10691 -8.40461 -8.35387 -7.41141 -6.03055 -4.06707 0.79053 1.12955 1.69473 2.18039 2.47672 3.29304 3.37060 3.40689 3.64737 4.27118 4.43429 4.64610 4.84877 5.05533 5.31010 5.32836 5.51285 5.75972 5.81004 5.97891 6.04268 6.13537 6.17220 6.43160 6.59271 6.74853 6.88577 6.97990 7.63327 7.74347 7.95827 8.35262 9.00359 9.57894 11.07903 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.006171 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.154112 B = 4536.323657 C = 5449.262860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.063 4.063 11 C -0.059 4.059 12 C -0.198 4.198 13 S 0.062 5.938 14 C -0.150 4.150 15 C -0.059 4.059 16 C -0.141 4.141 17 C 0.093 3.907 18 F -0.139 7.139 19 C -0.103 4.103 20 C -0.034 4.034 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.168 0.832 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -15.377 -2.671 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.103 4.103 11 C -0.070 4.070 12 C -0.331 4.331 13 S 0.326 5.674 14 C -0.265 4.265 15 C -0.082 4.082 16 C -0.163 4.163 17 C 0.071 3.929 18 F -0.118 7.118 19 C -0.123 4.123 20 C -0.043 4.043 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.186 0.814 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.205 -16.387 -1.703 16.477 hybrid contribution 0.859 2.211 -1.022 2.583 sum 0.655 -14.176 -2.725 14.450 Atomic orbital electron populations 1.69983 1.06075 1.26578 1.50556 1.25018 0.94826 0.99268 0.95210 0.86542 0.80118 0.83772 0.77621 1.19686 1.20979 1.20992 1.21258 0.93091 0.90830 1.50967 0.92460 1.19080 0.93640 0.90349 0.97689 1.20653 0.98154 0.89746 1.01706 1.20162 0.99127 0.97886 0.89804 1.24808 1.06887 0.98787 1.02582 1.83810 1.61271 1.24872 0.97451 1.22698 1.05902 0.99775 0.98141 1.20208 0.98868 0.99112 0.90001 1.20924 1.01819 0.96079 0.97431 1.17283 1.01691 0.95064 0.78850 1.91499 1.94411 1.89749 1.36139 1.21029 1.00520 1.00563 0.90196 1.18990 0.98536 0.93453 0.93341 0.92984 0.96343 0.96363 0.91650 0.91830 0.81439 0.84872 0.84306 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.76 4.96 -27.88 -0.14 0.62 15 10 C -0.06 -1.26 5.29 -27.89 -0.15 -1.41 15 11 C -0.06 -1.07 5.22 -103.67 -0.54 -1.61 15 12 C -0.20 -3.15 10.74 28.84 0.31 -2.85 15 13 S 0.06 0.86 23.23 -107.50 -2.50 -1.64 15 14 C -0.15 -2.27 6.48 -38.44 -0.25 -2.52 15 15 C -0.06 -0.75 10.06 -39.28 -0.40 -1.14 15 16 C -0.14 -1.76 10.01 -39.58 -0.40 -2.16 15 17 C 0.09 1.39 7.27 -39.64 -0.29 1.10 15 18 F -0.14 -2.11 17.26 2.25 0.04 -2.07 15 19 C -0.10 -1.72 9.78 -38.80 -0.38 -2.09 15 20 C -0.03 -0.59 6.01 -105.37 -0.63 -1.23 15 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.06 1.25 8.09 -51.93 -0.42 0.83 15 25 H 0.06 1.24 7.83 -51.93 -0.41 0.83 15 26 H 0.17 2.38 8.06 -52.48 -0.42 1.96 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.15 2.47 7.81 -52.49 -0.41 2.06 15 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -30.00 275.24 -8.76 -38.75 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -2.89 Total: -3.03 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -3.27 Total: -26.57 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.00 -8.76 -38.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.756 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds