Wall clock time and date at job start Mon Mar 30 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47199 * 2 1 4 4 C 1.50698 * 109.47234 * 239.99704 * 2 1 3 5 5 H 1.07995 * 119.99838 * 240.00166 * 4 2 1 6 6 C 1.37879 * 119.99795 * 60.00113 * 4 2 1 7 7 N 1.31516 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47135 * 90.00302 * 8 6 4 10 10 H 1.48504 * 109.47172 * 209.99886 * 8 6 4 11 11 H 1.48496 * 109.47373 * 330.00499 * 8 6 4 12 12 C 1.50701 * 109.47000 * 119.99558 * 2 1 3 13 13 C 1.31833 * 122.55447 * 60.02243 * 12 2 1 14 14 S 1.75294 * 111.39937 * 179.97438 * 13 12 2 15 15 C 1.75939 * 92.19444 * 0.02562 * 14 13 12 16 16 C 1.39829 * 130.45548 * 179.97438 * 15 14 13 17 17 C 1.37428 * 120.36608 * 180.02562 * 16 15 14 18 18 C 1.39045 * 120.17277 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.81000 * 180.02562 * 18 17 16 20 20 C 1.37272 * 120.38971 * 0.02562 * 18 17 16 21 21 C 1.39700 * 109.66809 * 359.97438 * 15 14 13 22 22 H 1.08997 * 109.47106 * 59.99518 * 1 2 3 23 23 H 1.09000 * 109.47652 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47191 * 300.00293 * 1 2 3 25 25 H 0.96999 * 119.99793 * 179.97438 * 7 6 4 26 26 H 1.08003 * 124.30127 * 359.97438 * 13 12 2 27 27 H 1.08005 * 119.82080 * 0.02562 * 16 15 14 28 28 H 1.07999 * 119.91681 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.83648 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7118 12 6 2.0323 -0.7103 1.2305 13 6 1.7453 -1.9708 1.4889 14 16 2.4789 -2.4990 2.9907 15 6 3.2059 -0.9212 3.2691 16 6 4.0091 -0.4648 4.3188 17 6 4.4708 0.8295 4.3281 18 6 4.1424 1.6962 3.2916 19 9 4.6007 2.9669 3.3080 20 6 3.3551 1.2682 2.2517 21 6 2.8705 -0.0579 2.2233 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7087 1.1612 -3.4844 26 1 1.1356 -2.5984 0.8556 27 1 4.2682 -1.1332 5.1267 28 1 5.0911 1.1743 5.1422 29 1 3.1051 1.9490 1.4515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:46 Heat of formation + Delta-G solvation = -14.726817 kcal Electronic energy + Delta-G solvation = -15439.391418 eV Core-core repulsion = 12753.783616 eV Total energy + Delta-G solvation = -2685.607802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.66048 -39.17970 -35.91870 -33.06811 -30.59529 -30.29166 -28.20633 -25.20555 -23.63447 -22.72632 -21.40975 -18.72395 -17.79699 -16.49762 -16.31338 -15.95051 -15.37254 -14.94377 -14.66897 -13.69571 -13.51251 -13.19020 -13.05019 -12.69917 -12.32775 -11.79008 -11.60101 -11.22564 -11.05687 -10.93156 -10.54705 -10.47947 -10.21910 -10.16487 -9.53836 -9.29228 -8.95007 -8.43785 -8.12932 -7.17364 -6.07683 -4.14981 1.00846 1.28241 1.93856 2.47384 2.81902 3.26258 3.33542 3.37369 3.86163 4.37953 4.41614 4.82704 5.01450 5.22830 5.28620 5.46624 5.82544 5.98531 6.07857 6.21634 6.28198 6.37673 6.70708 6.77252 6.92729 7.01704 7.12746 7.19115 7.63207 7.84170 8.00870 8.29642 8.87098 9.50116 10.97892 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.007345 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.212017 B = 3810.950029 C = 4482.278299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.090 3.910 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.042 4.042 13 C -0.189 4.189 14 S 0.039 5.961 15 C -0.150 4.150 16 C -0.060 4.060 17 C -0.147 4.147 18 C 0.087 3.913 19 F -0.142 7.142 20 C -0.104 4.104 21 C -0.033 4.033 22 H 0.088 0.912 23 H 0.029 0.971 24 H 0.010 0.990 25 H 0.262 0.738 26 H 0.168 0.832 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 -2.125 11.605 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.051 4.051 13 C -0.321 4.321 14 S 0.303 5.697 15 C -0.266 4.266 16 C -0.083 4.083 17 C -0.168 4.168 18 C 0.066 3.934 19 F -0.121 7.121 20 C -0.124 4.124 21 C -0.042 4.042 22 H 0.106 0.894 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.185 0.815 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.549 -3.405 12.196 13.150 hybrid contribution 0.408 1.031 -1.684 2.017 sum 3.957 -2.374 10.512 11.480 Atomic orbital electron populations 1.21807 0.97260 0.99411 1.00487 1.17677 0.92835 0.95338 0.87196 0.94432 1.21110 1.31483 1.12484 0.89716 0.92369 1.24947 0.94960 0.94956 0.98969 1.69876 1.36475 1.22752 1.23589 0.86561 0.79340 0.79410 0.82563 1.20621 1.21148 1.19849 1.20488 0.94664 0.93599 0.96386 1.24714 1.08254 0.99479 0.99662 1.83709 1.52555 1.10654 1.22831 1.22698 1.05345 0.98603 0.99916 1.20190 0.96390 0.95004 0.96680 1.20858 1.03347 0.93560 0.99016 1.17276 0.99451 0.79736 0.96971 1.91479 1.87374 1.36636 1.96625 1.21027 0.97466 0.95757 0.98171 1.19203 0.98015 0.93093 0.93892 0.89383 0.95227 0.97134 0.92824 0.81493 0.85118 0.84576 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.80 37.16 0.33 -2.75 15 2 C 0.09 2.19 2.56 -92.92 -0.24 1.95 15 3 H 0.04 0.97 6.88 -51.93 -0.36 0.61 15 4 C -0.51 -13.48 8.30 -34.44 -0.29 -13.76 15 5 H 0.06 1.54 7.63 -52.49 -0.40 1.14 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 15 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 15 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 12 C -0.04 -0.88 4.80 -103.67 -0.50 -1.38 15 13 C -0.19 -3.61 9.82 28.84 0.28 -3.33 15 14 S 0.04 0.62 23.23 -107.50 -2.50 -1.88 15 15 C -0.15 -2.54 6.48 -38.44 -0.25 -2.79 15 16 C -0.06 -0.83 10.06 -39.28 -0.40 -1.23 15 17 C -0.15 -1.98 10.01 -39.58 -0.40 -2.38 15 18 C 0.09 1.39 7.27 -39.63 -0.29 1.11 15 19 F -0.14 -2.24 17.26 2.25 0.04 -2.21 15 20 C -0.10 -1.88 9.73 -38.80 -0.38 -2.26 15 21 C -0.03 -0.63 6.01 -105.38 -0.63 -1.27 15 22 H 0.09 2.25 6.07 -51.93 -0.32 1.94 15 23 H 0.03 0.65 7.70 -51.93 -0.40 0.25 15 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.17 3.11 7.88 -52.48 -0.41 2.70 15 27 H 0.13 1.41 8.06 -52.48 -0.42 0.98 15 28 H 0.14 1.42 8.06 -52.49 -0.42 0.99 15 29 H 0.14 2.64 7.15 -52.49 -0.38 2.27 15 LS Contribution 267.66 15.07 4.03 4.03 Total: -1.00 -27.31 267.66 -8.33 -35.64 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -2.66 Total: -1.00 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.85 Total: -26.48 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.92 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.50 Total: -1.88 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.31 -8.33 -35.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.912 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds