Wall clock time and date at job start Mon Mar 30 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47199 * 2 1 4 4 C 1.50698 * 109.47234 * 239.99704 * 2 1 3 5 5 H 1.07995 * 119.99838 * 240.00166 * 4 2 1 6 6 C 1.37879 * 119.99795 * 60.00113 * 4 2 1 7 7 N 1.31516 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47135 * 90.00302 * 8 6 4 10 10 H 1.48504 * 109.47172 * 209.99886 * 8 6 4 11 11 H 1.48496 * 109.47373 * 330.00499 * 8 6 4 12 12 C 1.50701 * 109.47000 * 119.99558 * 2 1 3 13 13 C 1.31833 * 122.55447 * 60.02243 * 12 2 1 14 14 S 1.75294 * 111.39937 * 179.97438 * 13 12 2 15 15 C 1.75939 * 92.19444 * 0.02562 * 14 13 12 16 16 C 1.39829 * 130.45548 * 179.97438 * 15 14 13 17 17 C 1.37428 * 120.36608 * 180.02562 * 16 15 14 18 18 C 1.39045 * 120.17277 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.81000 * 180.02562 * 18 17 16 20 20 C 1.37272 * 120.38971 * 0.02562 * 18 17 16 21 21 C 1.39700 * 109.66809 * 359.97438 * 15 14 13 22 22 H 1.08997 * 109.47106 * 59.99518 * 1 2 3 23 23 H 1.09000 * 109.47652 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47191 * 300.00293 * 1 2 3 25 25 H 0.96999 * 119.99793 * 179.97438 * 7 6 4 26 26 H 1.08003 * 124.30127 * 359.97438 * 13 12 2 27 27 H 1.08005 * 119.82080 * 0.02562 * 16 15 14 28 28 H 1.07999 * 119.91681 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.83648 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7118 12 6 2.0323 -0.7103 1.2305 13 6 1.7453 -1.9708 1.4889 14 16 2.4789 -2.4990 2.9907 15 6 3.2059 -0.9212 3.2691 16 6 4.0091 -0.4648 4.3188 17 6 4.4708 0.8295 4.3281 18 6 4.1424 1.6962 3.2916 19 9 4.6007 2.9669 3.3080 20 6 3.3551 1.2682 2.2517 21 6 2.8705 -0.0579 2.2233 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7087 1.1612 -3.4844 26 1 1.1356 -2.5984 0.8556 27 1 4.2682 -1.1332 5.1267 28 1 5.0911 1.1743 5.1422 29 1 3.1051 1.9490 1.4515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260132606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:46 Heat of formation + Delta-G solvation = -27.562046 kcal Electronic energy + Delta-G solvation = -15439.947996 eV Core-core repulsion = 12753.783616 eV Total energy + Delta-G solvation = -2686.164380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.91929 -40.50895 -37.48570 -34.88057 -32.15113 -31.74886 -29.66109 -27.24578 -25.14498 -24.01403 -22.96283 -20.28186 -19.11448 -18.22098 -17.80776 -17.38302 -16.63123 -16.55686 -16.20174 -15.14430 -15.01129 -14.65240 -14.43251 -14.23822 -13.84372 -13.44972 -13.22557 -12.89332 -12.85280 -12.58576 -12.25531 -12.15134 -11.80710 -11.74034 -11.27594 -11.03584 -10.50483 -10.46189 -9.45273 -8.50130 -8.11137 -6.26548 -0.29092 0.02532 0.65292 1.05458 1.37163 1.40708 1.43834 1.52027 2.40865 2.55940 3.14618 3.17770 3.62582 3.80431 4.06689 4.24928 4.42956 4.63732 4.75644 4.85538 4.93157 5.00972 5.06170 5.10968 5.16072 5.33485 5.48096 5.59846 5.79461 5.95823 6.01930 6.30020 6.81098 7.41437 8.92234 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.007345 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.212017 B = 3810.950029 C = 4482.278299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.090 3.910 3 H 0.006 0.994 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 C -0.071 4.071 13 C -0.200 4.200 14 S 0.109 5.891 15 C -0.164 4.164 16 C -0.047 4.047 17 C -0.129 4.129 18 C 0.088 3.912 19 F -0.143 7.143 20 C -0.132 4.132 21 C -0.063 4.063 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.022 0.978 25 H 0.262 0.738 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -3.629 13.834 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 H 0.024 0.976 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.081 4.081 13 C -0.333 4.333 14 S 0.373 5.627 15 C -0.280 4.280 16 C -0.070 4.070 17 C -0.150 4.150 18 C 0.066 3.934 19 F -0.122 7.122 20 C -0.153 4.153 21 C -0.071 4.071 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.182 0.818 27 H 0.192 0.808 28 H 0.197 0.803 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.919 -4.917 14.435 16.023 hybrid contribution 0.017 1.519 -2.279 2.739 sum 4.936 -3.398 12.155 13.552 Atomic orbital electron populations 1.21639 0.97054 0.99456 0.99727 1.17469 0.93081 0.93881 0.88604 0.97615 1.21375 1.31281 1.12364 0.90984 0.92981 1.25695 0.95196 0.95645 1.01727 1.70006 1.37455 1.23939 1.24107 0.85611 0.78873 0.78419 0.79122 1.19788 1.20923 1.19602 1.20270 0.96889 0.94606 0.96345 1.24846 1.07855 0.98934 1.01625 1.83338 1.50904 1.09047 1.19365 1.23059 1.05958 0.98827 1.00122 1.20709 0.94302 0.95598 0.96351 1.21307 1.02319 0.92762 0.98634 1.17456 0.98807 0.80075 0.97048 1.91477 1.87244 1.36855 1.96621 1.20960 0.99593 0.95667 0.99070 1.19155 0.99231 0.93969 0.94784 0.91975 0.94607 0.95884 0.92839 0.81784 0.80766 0.80341 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.80 71.98 0.63 -5.25 15 2 C 0.09 4.60 2.56 -12.29 -0.03 4.57 15 3 H 0.01 0.32 6.88 -2.39 -0.02 0.31 15 4 C -0.52 -28.56 8.30 25.60 0.21 -28.35 15 5 H 0.05 2.84 7.63 -2.91 -0.02 2.81 15 6 C 0.02 0.89 5.30 84.66 0.45 1.34 15 7 N -0.92 -52.43 11.32 21.45 0.24 -52.19 15 8 Si 0.95 43.41 29.54 68.60 2.03 45.43 15 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 12 C -0.07 -3.06 4.80 -18.81 -0.09 -3.15 15 13 C -0.20 -7.59 9.82 67.03 0.66 -6.94 15 14 S 0.11 3.20 23.23 -56.49 -1.31 1.88 15 15 C -0.16 -5.14 6.48 23.01 0.15 -5.00 15 16 C -0.05 -1.10 10.06 22.46 0.23 -0.87 15 17 C -0.13 -2.97 10.01 22.27 0.22 -2.74 15 18 C 0.09 2.69 7.27 22.24 0.16 2.85 15 19 F -0.14 -4.37 17.26 44.97 0.78 -3.59 15 20 C -0.13 -4.94 9.73 22.77 0.22 -4.72 15 21 C -0.06 -2.43 6.01 -20.35 -0.12 -2.55 15 22 H 0.06 3.33 6.07 -2.39 -0.01 3.32 15 23 H 0.03 1.63 7.70 -2.39 -0.02 1.61 15 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 26 H 0.16 6.15 7.88 -2.91 -0.02 6.12 15 27 H 0.17 2.58 8.06 -2.91 -0.02 2.55 15 28 H 0.18 2.63 8.06 -2.91 -0.02 2.61 15 29 H 0.12 4.87 7.15 -2.91 -0.02 4.85 15 Total: -1.00 -60.89 267.66 5.59 -55.30 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.17 Total: 3.97 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 2.69 Total: -50.81 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.24 Total: -52.19 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.88 kcal Total: -60.89 5.59 -55.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.742 kcal (2) G-P(sol) polarization free energy of solvation -60.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds