Wall clock time and date at job start Mon Mar 30 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46780 * 2 1 4 4 C 1.50701 * 109.46880 * 120.00110 * 2 1 3 5 5 H 1.07996 * 120.00348 * 114.36319 * 4 2 1 6 6 C 1.37878 * 119.99580 * 294.35477 * 4 2 1 7 7 N 1.31520 * 119.99592 * 156.96642 * 6 4 2 8 8 Si 1.86801 * 120.00536 * 336.96690 * 6 4 2 9 9 H 1.48496 * 109.47350 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46959 * 59.99694 * 8 6 4 11 11 H 1.48505 * 109.47037 * 299.99969 * 8 6 4 12 12 C 1.50693 * 109.47099 * 239.99564 * 2 1 3 13 13 C 1.31832 * 122.55853 * 300.02768 * 12 2 1 14 14 S 1.75293 * 111.39573 * 179.97438 * 13 12 2 15 15 C 1.75936 * 92.19866 * 359.97438 * 14 13 12 16 16 C 1.39836 * 130.46180 * 180.02562 * 15 14 13 17 17 C 1.37416 * 120.36804 * 179.97438 * 16 15 14 18 18 C 1.39053 * 120.17438 * 0.02562 * 17 16 15 19 19 F 1.35094 * 119.80612 * 179.97438 * 18 17 16 20 20 C 1.37258 * 120.38958 * 359.97438 * 18 17 16 21 21 C 1.39704 * 109.66504 * 359.75085 * 15 14 13 22 22 H 1.09007 * 109.46801 * 173.26557 * 1 2 3 23 23 H 1.08995 * 109.46910 * 293.26225 * 1 2 3 24 24 H 1.08997 * 109.47189 * 53.26817 * 1 2 3 25 25 H 0.96996 * 120.00502 * 354.92645 * 7 6 4 26 26 H 1.07992 * 124.29931 * 359.95467 * 13 12 2 27 27 H 1.08001 * 119.81296 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.91385 * 179.97438 * 17 16 15 29 29 H 1.07992 * 119.84158 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6386 1.1341 6 6 1.7978 -0.1754 2.4794 7 7 1.8095 -0.9524 3.5404 8 14 1.4635 1.6531 2.6645 9 1 1.2439 1.9736 4.0977 10 1 0.2524 2.0162 1.8854 11 1 2.6276 2.4230 2.1573 12 6 2.0324 -0.7105 -1.2304 13 6 1.7446 -1.9707 -1.4890 14 16 2.4774 -2.4986 -2.9914 15 6 3.2050 -0.9211 -3.2695 16 6 4.0081 -0.4645 -4.3193 17 6 4.4704 0.8295 -4.3283 18 6 4.1427 1.6960 -3.2912 19 9 4.6017 2.9664 -3.3073 20 6 3.3557 1.2680 -2.2513 21 6 2.8654 -0.0562 -2.2263 22 1 -0.3633 -1.0207 -0.1205 23 1 -0.3633 0.4059 0.9441 24 1 -0.3633 0.6146 -0.8236 25 1 1.9097 -1.9118 3.4379 26 1 1.1352 -2.5982 -0.8557 27 1 4.2658 -1.1325 -5.1279 28 1 5.0906 1.1743 -5.1425 29 1 3.1071 1.9482 -1.4502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:48 Heat of formation + Delta-G solvation = -14.580147 kcal Electronic energy + Delta-G solvation = -15509.536330 eV Core-core repulsion = 12823.934888 eV Total energy + Delta-G solvation = -2685.601442 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.75020 -39.29434 -36.08017 -33.06606 -30.92777 -30.60159 -28.47968 -24.89229 -23.63403 -22.82333 -21.37211 -18.72638 -17.91861 -17.32304 -16.58229 -16.11991 -15.46341 -15.09385 -14.22160 -13.81693 -13.57980 -13.35230 -13.20407 -12.77024 -12.43439 -12.21317 -11.91057 -11.54163 -11.31950 -10.67350 -10.54358 -10.48118 -10.35573 -9.84231 -9.80111 -9.36408 -9.00673 -8.25747 -8.23620 -7.30944 -6.50396 -4.12597 0.91309 1.18856 1.84606 2.37122 2.71343 3.36103 3.41065 3.57792 3.75770 4.31992 4.45747 4.73170 4.91071 5.12502 5.20235 5.36617 5.72318 5.87665 5.91806 6.10820 6.16554 6.22228 6.33252 6.47451 6.61954 6.74164 6.92625 6.93381 7.12087 7.42349 8.01521 8.32507 8.83593 9.52265 10.84382 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.008460 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.010296 B = 3309.025716 C = 4274.084972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 H 0.029 0.971 4 C -0.601 4.601 5 H 0.060 0.940 6 C 0.040 3.960 7 N -0.896 5.896 8 Si 1.032 2.968 9 H -0.284 1.284 10 H -0.275 1.275 11 H -0.282 1.282 12 C -0.037 4.037 13 C -0.186 4.186 14 S 0.047 5.953 15 C -0.151 4.151 16 C -0.058 4.058 17 C -0.146 4.146 18 C 0.090 3.910 19 F -0.142 7.142 20 C -0.108 4.108 21 C -0.034 4.034 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.024 0.976 25 H 0.270 0.730 26 H 0.168 0.832 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 1.674 -14.674 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.047 0.953 4 C -0.638 4.638 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.528 5.528 8 Si 0.860 3.140 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.208 1.208 12 C -0.047 4.047 13 C -0.318 4.318 14 S 0.311 5.689 15 C -0.266 4.266 16 C -0.080 4.080 17 C -0.167 4.167 18 C 0.068 3.932 19 F -0.120 7.120 20 C -0.128 4.128 21 C -0.043 4.043 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.185 0.815 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.561 1.446 -14.266 14.424 hybrid contribution 0.440 0.205 -0.291 0.566 sum 2.001 1.651 -14.557 14.786 Atomic orbital electron populations 1.22185 0.97754 1.00089 0.99731 1.17944 0.92282 0.95279 0.90015 0.95283 1.21882 1.41009 1.10607 0.90289 0.92200 1.25693 0.93255 1.05665 0.92016 1.70850 1.43675 1.06435 1.31861 0.84203 0.77350 0.76157 0.76307 1.20979 1.20131 1.20843 1.20111 0.95316 0.93647 0.95604 1.24706 1.08027 0.99338 0.99742 1.83748 1.52291 1.10554 1.22285 1.22701 1.05324 0.98572 0.99986 1.20206 0.96202 0.95016 0.96622 1.20872 1.03269 0.93534 0.99023 1.17260 0.99284 0.79769 0.96873 1.91483 1.87341 1.36592 1.96613 1.20979 0.97844 0.95762 0.98223 1.19169 0.98138 0.93132 0.93910 0.93631 0.92628 0.95673 0.92019 0.81493 0.84995 0.84448 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.84 37.16 0.33 -2.64 15 2 C 0.07 1.52 2.15 -92.92 -0.20 1.32 15 3 H 0.03 0.67 5.46 -51.93 -0.28 0.39 15 4 C -0.60 -16.20 8.53 -34.44 -0.29 -16.49 15 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 6 C 0.04 1.12 5.20 -17.82 -0.09 1.02 15 7 N -0.90 -26.66 13.70 55.43 0.76 -25.90 15 8 Si 1.03 24.36 26.44 -169.99 -4.49 19.87 15 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 10 H -0.28 -5.99 6.14 56.52 0.35 -5.64 15 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 12 C -0.04 -0.76 4.81 -103.68 -0.50 -1.26 15 13 C -0.19 -3.53 9.68 28.84 0.28 -3.25 15 14 S 0.05 0.75 23.23 -107.50 -2.50 -1.75 15 15 C -0.15 -2.48 6.48 -38.44 -0.25 -2.73 15 16 C -0.06 -0.78 10.06 -39.28 -0.40 -1.17 15 17 C -0.15 -1.90 10.01 -39.58 -0.40 -2.30 15 18 C 0.09 1.38 7.27 -39.64 -0.29 1.09 15 19 F -0.14 -2.14 17.26 2.25 0.04 -2.10 15 20 C -0.11 -1.88 9.73 -38.80 -0.38 -2.26 15 21 C -0.03 -0.64 6.01 -105.37 -0.63 -1.28 15 22 H 0.04 0.93 7.46 -51.93 -0.39 0.54 15 23 H 0.05 1.23 5.46 -51.93 -0.28 0.94 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.27 7.99 8.73 -40.82 -0.36 7.64 15 26 H 0.17 3.15 7.82 -52.49 -0.41 2.74 15 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 28 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.14 2.44 7.15 -52.49 -0.38 2.06 15 LS Contribution 263.89 15.07 3.98 3.98 Total: -1.00 -28.63 263.89 -7.66 -36.29 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -2.63 Total: -0.45 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -2.82 Total: -29.92 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.76 Total: -25.90 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.49 Total: 19.87 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.63 -7.66 -36.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.709 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds