Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46780 * 2 1 4 4 C 1.50701 * 109.46880 * 120.00110 * 2 1 3 5 5 H 1.07996 * 120.00348 * 114.36319 * 4 2 1 6 6 C 1.37878 * 119.99580 * 294.35477 * 4 2 1 7 7 N 1.31520 * 119.99592 * 156.96642 * 6 4 2 8 8 Si 1.86801 * 120.00536 * 336.96690 * 6 4 2 9 9 H 1.48496 * 109.47350 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46959 * 59.99694 * 8 6 4 11 11 H 1.48505 * 109.47037 * 299.99969 * 8 6 4 12 12 C 1.50693 * 109.47099 * 239.99564 * 2 1 3 13 13 C 1.31832 * 122.55853 * 300.02768 * 12 2 1 14 14 S 1.75293 * 111.39573 * 179.97438 * 13 12 2 15 15 C 1.75936 * 92.19866 * 359.97438 * 14 13 12 16 16 C 1.39836 * 130.46180 * 180.02562 * 15 14 13 17 17 C 1.37416 * 120.36804 * 179.97438 * 16 15 14 18 18 C 1.39053 * 120.17438 * 0.02562 * 17 16 15 19 19 F 1.35094 * 119.80612 * 179.97438 * 18 17 16 20 20 C 1.37258 * 120.38958 * 359.97438 * 18 17 16 21 21 C 1.39704 * 109.66504 * 359.75085 * 15 14 13 22 22 H 1.09007 * 109.46801 * 173.26557 * 1 2 3 23 23 H 1.08995 * 109.46910 * 293.26225 * 1 2 3 24 24 H 1.08997 * 109.47189 * 53.26817 * 1 2 3 25 25 H 0.96996 * 120.00502 * 354.92645 * 7 6 4 26 26 H 1.07992 * 124.29931 * 359.95467 * 13 12 2 27 27 H 1.08001 * 119.81296 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.91385 * 179.97438 * 17 16 15 29 29 H 1.07992 * 119.84158 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5761 -1.6386 1.1341 6 6 1.7978 -0.1754 2.4794 7 7 1.8095 -0.9524 3.5404 8 14 1.4635 1.6531 2.6645 9 1 1.2439 1.9736 4.0977 10 1 0.2524 2.0162 1.8854 11 1 2.6276 2.4230 2.1573 12 6 2.0324 -0.7105 -1.2304 13 6 1.7446 -1.9707 -1.4890 14 16 2.4774 -2.4986 -2.9914 15 6 3.2050 -0.9211 -3.2695 16 6 4.0081 -0.4645 -4.3193 17 6 4.4704 0.8295 -4.3283 18 6 4.1427 1.6960 -3.2912 19 9 4.6017 2.9664 -3.3073 20 6 3.3557 1.2680 -2.2513 21 6 2.8654 -0.0562 -2.2263 22 1 -0.3633 -1.0207 -0.1205 23 1 -0.3633 0.4059 0.9441 24 1 -0.3633 0.6146 -0.8236 25 1 1.9097 -1.9118 3.4379 26 1 1.1352 -2.5982 -0.8557 27 1 4.2658 -1.1325 -5.1279 28 1 5.0906 1.1743 -5.1425 29 1 3.1071 1.9482 -1.4502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260132611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = -29.869005 kcal Electronic energy + Delta-G solvation = -15510.199305 eV Core-core repulsion = 12823.934888 eV Total energy + Delta-G solvation = -2686.264417 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.93281 -40.57977 -37.59750 -34.93122 -32.67567 -31.81620 -29.83964 -26.83314 -25.13261 -24.05529 -22.88803 -20.35235 -19.41335 -19.06870 -17.84548 -17.39802 -16.64544 -16.36379 -15.92714 -15.36337 -15.03440 -14.83982 -14.53231 -14.28752 -14.00687 -13.83271 -13.42211 -13.13573 -12.83010 -12.38919 -12.03073 -11.91534 -11.85772 -11.65160 -11.49334 -11.09875 -10.56101 -10.39221 -9.52152 -8.82803 -8.48567 -6.34161 -0.34501 -0.00751 0.58275 0.98342 1.33081 1.46026 1.51319 1.70814 2.48264 2.50094 3.00220 3.13279 3.57506 3.73115 4.02352 4.19579 4.32652 4.43637 4.61713 4.74969 4.83721 4.84767 4.94252 4.96945 5.06825 5.13198 5.37018 5.41006 5.70622 5.78371 6.01187 6.07890 6.57706 7.38304 8.61159 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.008460 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.010296 B = 3309.025716 C = 4274.084972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.031 0.969 4 C -0.597 4.597 5 H 0.021 0.979 6 C -0.009 4.009 7 N -0.931 5.931 8 Si 1.069 2.931 9 H -0.288 1.288 10 H -0.244 1.244 11 H -0.268 1.268 12 C -0.063 4.063 13 C -0.204 4.204 14 S 0.106 5.894 15 C -0.164 4.164 16 C -0.048 4.048 17 C -0.128 4.128 18 C 0.091 3.909 19 F -0.141 7.141 20 C -0.132 4.132 21 C -0.063 4.063 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.255 0.745 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 2.706 -17.897 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.049 0.951 4 C -0.634 4.634 5 H 0.039 0.961 6 C -0.208 4.208 7 N -0.565 5.565 8 Si 0.891 3.109 9 H -0.214 1.214 10 H -0.168 1.168 11 H -0.193 1.193 12 C -0.074 4.074 13 C -0.337 4.337 14 S 0.370 5.630 15 C -0.279 4.279 16 C -0.070 4.070 17 C -0.149 4.149 18 C 0.069 3.931 19 F -0.120 7.120 20 C -0.152 4.152 21 C -0.072 4.072 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.174 0.826 27 H 0.190 0.810 28 H 0.197 0.803 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.195 2.467 -17.520 17.828 hybrid contribution 0.330 -0.195 0.593 0.706 sum 2.526 2.272 -16.927 17.264 Atomic orbital electron populations 1.22068 0.96397 1.00611 1.00180 1.17837 0.93337 0.95025 0.89574 0.95135 1.22017 1.39755 1.09231 0.92419 0.96088 1.27007 0.92818 1.09112 0.91878 1.70970 1.46904 1.05735 1.32928 0.83740 0.79098 0.71561 0.76528 1.21433 1.16836 1.19308 1.20030 0.97111 0.94441 0.95811 1.24796 1.08080 0.99112 1.01700 1.83409 1.50954 1.09573 1.19032 1.23048 1.05963 0.98518 1.00410 1.20696 0.94317 0.95703 0.96301 1.21323 1.02136 0.92686 0.98765 1.17423 0.98632 0.80104 0.96918 1.91488 1.87194 1.36672 1.96598 1.20989 0.99488 0.95507 0.99258 1.19111 0.99337 0.94169 0.94573 0.93714 0.93676 0.92990 0.93631 0.82644 0.80960 0.80329 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.84 71.98 0.64 -5.05 15 2 C 0.06 2.97 2.15 -12.29 -0.03 2.94 15 3 H 0.03 1.41 5.46 -2.39 -0.01 1.39 15 4 C -0.60 -33.46 8.53 25.60 0.22 -33.24 15 5 H 0.02 1.30 7.81 -2.91 -0.02 1.28 15 6 C -0.01 -0.49 5.20 84.65 0.44 -0.05 15 7 N -0.93 -57.70 13.70 21.45 0.29 -57.40 15 8 Si 1.07 49.37 26.44 68.60 1.81 51.19 15 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 15 10 H -0.24 -10.00 6.14 99.48 0.61 -9.39 15 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 12 C -0.06 -2.64 4.81 -18.81 -0.09 -2.73 15 13 C -0.20 -7.83 9.68 67.03 0.65 -7.18 15 14 S 0.11 3.13 23.23 -56.49 -1.31 1.82 15 15 C -0.16 -4.98 6.48 23.01 0.15 -4.84 15 16 C -0.05 -1.07 10.06 22.46 0.23 -0.84 15 17 C -0.13 -2.73 10.01 22.27 0.22 -2.51 15 18 C 0.09 2.55 7.27 22.23 0.16 2.71 15 19 F -0.14 -3.90 17.26 44.97 0.78 -3.13 15 20 C -0.13 -4.48 9.73 22.77 0.22 -4.25 15 21 C -0.06 -2.31 6.01 -20.35 -0.12 -2.44 15 22 H 0.04 1.84 7.46 -2.38 -0.02 1.82 15 23 H 0.04 1.96 5.46 -2.39 -0.01 1.94 15 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.25 16.00 8.73 -92.71 -0.81 15.19 15 26 H 0.16 6.13 7.82 -2.91 -0.02 6.11 15 27 H 0.17 2.46 8.06 -2.91 -0.02 2.44 15 28 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 29 H 0.13 4.54 7.15 -2.91 -0.02 4.52 15 Total: -1.00 -64.47 263.89 5.30 -59.18 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.04 Total: 5.83 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 2.69 Total: -57.49 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.29 Total: -57.40 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.81 Total: 51.19 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -64.47 5.30 -59.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.308 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds