Wall clock time and date at job start Mon Mar 30 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30250 * 126.10909 * 2 1 4 4 N 1.39869 * 110.08298 * 180.13430 * 3 2 1 5 5 C 1.46500 * 125.46467 * 179.79918 * 4 3 2 6 6 C 1.50696 * 109.46944 * 269.69309 * 5 4 3 7 7 H 1.07999 * 120.00202 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99746 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99573 * 0.27650 * 8 6 5 10 10 Si 1.86800 * 119.99781 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47035 * 60.00183 * 10 8 6 12 12 H 1.48503 * 109.46845 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47237 * 299.99939 * 10 8 6 14 14 C 1.37041 * 109.07437 * 359.53454 * 4 3 2 15 15 C 1.39302 * 133.84361 * 180.26020 * 14 4 3 16 16 C 1.36598 * 119.87861 * 180.02562 * 15 14 4 17 17 C 1.38946 * 120.82545 * 0.02562 * 16 15 14 18 18 C 1.36580 * 120.61271 * 359.96267 * 17 16 15 19 19 Cl 1.73610 * 120.19167 * 180.02562 * 18 17 16 20 20 C 1.40040 * 119.61810 * 0.03702 * 18 17 16 21 21 H 1.09004 * 109.47214 * 270.37529 * 1 2 3 22 22 H 1.08996 * 109.47116 * 30.37178 * 1 2 3 23 23 H 1.08995 * 109.47001 * 150.37686 * 1 2 3 24 24 H 1.09000 * 109.46609 * 149.69491 * 5 4 3 25 25 H 1.08999 * 109.46486 * 29.69570 * 5 4 3 26 26 H 0.97001 * 120.00651 * 359.71956 * 9 8 6 27 27 H 1.08000 * 120.05767 * 359.97438 * 15 14 4 28 28 H 1.07993 * 119.58416 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.68752 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2746 1.0523 0.0000 4 7 3.6189 0.6661 -0.0031 5 6 4.7653 1.5783 -0.0082 6 6 5.1590 1.8823 -1.4307 7 1 4.6105 1.4399 -2.2491 8 6 6.2202 2.7244 -1.6873 9 7 6.8921 3.2579 -0.6906 10 14 6.7087 3.1006 -3.4506 11 1 5.5671 3.7371 -4.1555 12 1 7.8707 4.0253 -3.4558 13 1 7.0764 1.8390 -4.1424 14 6 3.6918 -0.7023 0.0054 15 6 4.7464 -1.6124 0.0115 16 6 4.4878 -2.9536 0.0191 17 6 3.1813 -3.4268 0.0205 18 6 2.1271 -2.5585 0.0149 19 17 0.4992 -3.1617 0.0173 20 6 2.3669 -1.1788 0.0070 21 1 -0.3634 0.0067 1.0277 22 1 -0.3633 0.8866 -0.5196 23 1 -0.3633 -0.8933 -0.5079 24 1 5.6034 1.1112 0.5089 25 1 4.4951 2.5040 0.4999 26 1 6.6387 3.0623 0.2250 27 1 5.7667 -1.2582 0.0093 28 1 5.3089 -3.6550 0.0242 29 1 2.9979 -4.4911 0.0261 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260138713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:44 Heat of formation + Delta-G solvation = 64.091544 kcal Electronic energy + Delta-G solvation = -15548.541808 eV Core-core repulsion = 12884.228081 eV Total energy + Delta-G solvation = -2664.313727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85504 -37.24823 -36.13161 -34.35457 -32.55493 -29.87941 -29.55185 -28.90307 -25.66243 -23.19523 -22.59364 -21.44471 -19.44655 -17.39314 -16.66949 -16.18341 -15.27367 -14.84430 -14.31794 -14.06629 -13.81081 -13.22751 -12.90210 -12.82931 -12.47372 -12.04072 -11.95702 -11.85292 -11.31431 -10.97500 -10.89615 -10.85994 -10.66246 -10.21183 -10.12022 -9.59289 -8.91542 -8.64166 -8.35356 -7.32923 -6.63520 -4.41187 1.13592 1.75920 2.24767 2.88652 3.10717 3.33283 3.34858 3.53995 3.94967 4.35262 4.76932 4.91923 5.09036 5.16401 5.17086 5.52434 5.70236 5.78214 5.79888 5.85972 6.00628 6.16335 6.37605 6.56091 6.61405 6.64253 6.86288 7.04394 7.59348 7.62351 8.18627 8.28245 8.51072 9.27804 10.71978 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030137 B = 0.006323 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.879171 B = 4427.213339 C = 4835.200178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.072 3.928 3 N -0.239 5.239 4 N -0.355 5.355 5 C 0.254 3.746 6 C -0.618 4.618 7 H 0.058 0.942 8 C 0.027 3.973 9 N -0.900 5.900 10 Si 1.075 2.925 11 H -0.285 1.285 12 H -0.279 1.279 13 H -0.285 1.285 14 C 0.147 3.853 15 C -0.119 4.119 16 C -0.076 4.076 17 C -0.162 4.162 18 C 0.043 3.957 19 Cl -0.078 7.078 20 C -0.186 4.186 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.268 0.732 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -12.130 2.055 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 N -0.055 5.055 4 N -0.139 5.139 5 C 0.136 3.864 6 C -0.656 4.656 7 H 0.076 0.924 8 C -0.178 4.178 9 N -0.535 5.535 10 Si 0.902 3.098 11 H -0.211 1.211 12 H -0.204 1.204 13 H -0.211 1.211 14 C 0.027 3.973 15 C -0.141 4.141 16 C -0.097 4.097 17 C -0.183 4.183 18 C 0.014 3.986 19 Cl -0.049 7.049 20 C -0.195 4.195 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.249 -9.857 1.144 12.289 hybrid contribution -1.091 -1.680 0.908 2.199 sum -8.340 -11.537 2.051 14.383 Atomic orbital electron populations 1.20241 0.86240 1.03490 1.02881 1.23324 0.96398 0.88288 1.02265 1.76571 0.88206 1.23521 1.17159 1.49008 1.04206 1.02622 1.58085 1.19697 0.79187 0.87960 0.99516 1.22193 1.19040 1.33395 0.91019 0.92354 1.25922 0.92725 0.92673 1.06507 1.70845 1.40272 1.42248 1.00165 0.83446 0.76560 0.76709 0.73130 1.21127 1.20366 1.21098 1.18751 0.94201 0.85717 0.98660 1.20046 0.97956 0.91761 1.04317 1.20518 0.95966 0.94515 0.98707 1.20412 0.91314 0.99151 1.07394 1.19927 0.85105 0.90995 1.02599 1.98322 1.22086 1.87703 1.96827 1.19446 0.92827 0.92256 1.15007 0.90638 0.90749 0.90186 0.94149 0.93837 0.92170 0.84989 0.84917 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 9.99 36.00 0.36 -0.63 15 2 C 0.07 1.38 7.43 -80.19 -0.60 0.79 15 3 N -0.24 -5.41 12.40 34.83 0.43 -4.98 15 4 N -0.36 -8.41 3.63 -59.88 -0.22 -8.62 15 5 C 0.25 6.50 5.43 -5.20 -0.03 6.47 15 6 C -0.62 -17.24 9.39 -34.44 -0.32 -17.56 15 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 8 C 0.03 0.75 5.46 -17.82 -0.10 0.65 15 9 N -0.90 -26.01 13.65 55.43 0.76 -25.25 15 10 Si 1.07 24.60 29.90 -169.99 -5.08 19.52 15 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 14 C 0.15 3.08 6.87 -84.17 -0.58 2.50 15 15 C -0.12 -2.13 9.97 -39.78 -0.40 -2.53 15 16 C -0.08 -1.09 9.96 -39.91 -0.40 -1.49 15 17 C -0.16 -2.28 9.74 -39.92 -0.39 -2.67 15 18 C 0.04 0.68 6.32 -39.50 -0.25 0.43 15 19 Cl -0.08 -1.03 26.66 -51.86 -1.38 -2.41 15 20 C -0.19 -3.54 6.21 -105.18 -0.65 -4.19 15 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 23 H 0.08 1.02 6.26 -51.93 -0.33 0.70 15 24 H 0.04 1.01 8.00 -51.93 -0.42 0.60 15 25 H 0.04 1.16 8.01 -51.93 -0.42 0.74 15 26 H 0.27 7.61 7.22 -40.82 -0.29 7.31 15 27 H 0.13 2.32 8.06 -52.49 -0.42 1.90 15 28 H 0.13 1.44 8.06 -52.49 -0.42 1.01 15 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 LS Contribution 272.10 15.07 4.10 4.10 Total: -1.00 -30.40 272.10 -7.51 -37.91 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.77 Total: -2.04 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.35 Total: -18.22 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.97 Total: -38.86 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.38 Total: -2.41 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.40 -7.51 -37.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.003 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds