Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30232 * 126.10577 * 2 1 4 4 N 1.39869 * 110.09114 * 179.97438 * 3 2 1 5 5 C 1.46495 * 125.46560 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47290 * 269.96186 * 5 4 3 7 7 H 1.07995 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00108 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00066 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00002 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47280 * 89.99972 * 10 8 6 12 12 H 1.48500 * 109.47377 * 210.00090 * 10 8 6 13 13 H 1.48501 * 109.47346 * 329.99828 * 10 8 6 14 14 C 1.37053 * 109.07284 * 359.97438 * 4 3 2 15 15 C 1.39281 * 133.80271 * 179.97438 * 14 4 3 16 16 C 1.37685 * 119.72696 * 180.25556 * 15 14 4 17 17 Cl 1.73596 * 119.67998 * 179.72397 * 16 15 14 18 18 C 1.39100 * 120.64075 * 359.52528 * 16 15 14 19 19 C 1.36421 * 120.61958 * 0.45767 * 18 16 15 20 20 C 1.39933 * 119.79472 * 359.78677 * 19 18 16 21 21 H 1.09003 * 109.47212 * 270.02122 * 1 2 3 22 22 H 1.08999 * 109.47577 * 30.02438 * 1 2 3 23 23 H 1.09004 * 109.47211 * 150.02794 * 1 2 3 24 24 H 1.09010 * 109.46666 * 29.96185 * 5 4 3 25 25 H 1.08999 * 109.47027 * 149.95899 * 5 4 3 26 26 H 0.96998 * 119.99943 * 179.97438 * 9 8 6 27 27 H 1.08002 * 120.13359 * 359.97317 * 15 14 4 28 28 H 1.08001 * 119.69287 * 180.22052 * 18 16 15 29 29 H 1.07995 * 120.09824 * 179.80576 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0522 0.0000 4 7 3.6188 0.6663 0.0006 5 6 4.7650 1.5787 0.0013 6 6 5.1593 1.8910 -1.4192 7 1 4.6112 1.4533 -2.2404 8 6 6.2197 2.7356 -1.6705 9 7 6.5642 3.0078 -2.9102 10 14 7.1673 3.4932 -0.2501 11 1 8.2908 2.5990 0.1283 12 1 7.7039 4.8151 -0.6621 13 1 6.2604 3.6678 0.9128 14 6 3.6919 -0.7023 0.0016 15 6 4.7471 -1.6113 0.0020 16 6 4.4840 -2.9628 -0.0023 17 17 5.8002 -4.0947 -0.0090 18 6 3.1738 -3.4300 0.0028 19 6 2.1251 -2.5575 0.0028 20 6 2.3671 -1.1793 0.0022 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5134 24 1 4.4944 2.5015 0.5146 25 1 5.6030 1.1088 0.5161 26 1 7.3100 3.6022 -3.0869 27 1 5.7676 -1.2575 0.0011 28 1 2.9850 -4.4933 0.0029 29 1 1.1112 -2.9295 0.0037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = 71.421456 kcal Electronic energy + Delta-G solvation = -15436.921943 eV Core-core repulsion = 12772.926065 eV Total energy + Delta-G solvation = -2663.995878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83600 -37.32537 -35.83683 -34.16223 -32.53331 -30.17290 -29.55285 -29.17868 -26.29094 -23.03137 -22.44783 -21.20975 -19.32991 -17.16039 -16.69653 -16.43882 -15.42295 -14.81727 -14.36016 -13.87724 -13.86124 -13.15312 -13.05657 -12.64259 -12.53577 -12.40462 -12.15681 -11.85283 -11.31211 -11.07701 -10.84929 -10.77869 -10.65675 -10.25597 -10.13783 -9.76607 -9.36416 -8.81676 -8.19285 -7.34134 -6.29560 -4.33394 1.14282 1.74728 2.25595 2.87812 3.08370 3.14919 3.20489 3.25675 3.95927 4.18654 4.78954 4.82070 4.96241 5.07647 5.28201 5.57017 5.67664 5.71639 5.74182 5.79419 5.97924 6.18139 6.39557 6.41250 6.49493 6.60787 6.84011 7.05643 7.24001 7.59003 8.22680 8.26803 8.74300 9.25165 10.82951 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.008145 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.575144 B = 3437.028953 C = 4691.072211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.066 3.934 3 N -0.234 5.234 4 N -0.357 5.357 5 C 0.236 3.764 6 C -0.545 4.545 7 H 0.080 0.920 8 C 0.080 3.920 9 N -0.885 5.885 10 Si 0.872 3.128 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.146 3.854 15 C -0.116 4.116 16 C 0.004 3.996 17 Cl -0.076 7.076 18 C -0.165 4.165 19 C -0.030 4.030 20 C -0.184 4.184 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.269 0.731 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 -11.269 7.628 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 N -0.050 5.050 4 N -0.141 5.141 5 C 0.117 3.883 6 C -0.583 4.583 7 H 0.098 0.902 8 C -0.124 4.124 9 N -0.521 5.521 10 Si 0.698 3.302 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.188 1.188 14 C 0.027 3.973 15 C -0.139 4.139 16 C -0.025 4.025 17 Cl -0.048 7.048 18 C -0.185 4.185 19 C -0.051 4.051 20 C -0.192 4.192 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.018 -9.793 7.504 14.194 hybrid contribution 0.981 -0.359 0.439 1.133 sum -6.037 -10.152 7.943 14.234 Atomic orbital electron populations 1.20109 0.86236 1.03334 1.02717 1.23385 0.96394 0.88703 1.02509 1.76557 0.88034 1.23609 1.16784 1.48794 1.04070 1.02440 1.58814 1.19987 0.80031 0.88579 0.99705 1.21191 1.16466 1.30294 0.90381 0.90182 1.24799 0.96379 0.95407 0.95828 1.69869 1.27996 1.35597 1.18687 0.86912 0.80860 0.79675 0.82775 1.19538 1.20376 1.18799 1.18558 0.94501 0.85569 0.98696 1.19891 0.98686 0.89779 1.05556 1.20454 0.88655 0.89399 1.04002 1.98345 1.48465 1.60990 1.96957 1.20319 0.90138 1.00004 1.08083 1.20086 0.98646 0.90174 0.96190 1.19841 0.91972 0.94171 1.13258 0.90645 0.90610 0.90571 0.93045 0.93936 0.92050 0.84464 0.85240 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.48 36.00 0.38 -0.40 15 2 C 0.07 1.15 7.43 -80.18 -0.60 0.56 15 3 N -0.23 -5.05 12.40 34.84 0.43 -4.61 15 4 N -0.36 -8.15 3.63 -59.88 -0.22 -8.36 15 5 C 0.24 5.70 5.19 -5.20 -0.03 5.67 15 6 C -0.55 -15.37 9.94 -34.44 -0.34 -15.71 15 7 H 0.08 2.55 8.06 -52.49 -0.42 2.13 15 8 C 0.08 2.25 5.47 -17.82 -0.10 2.16 15 9 N -0.88 -26.41 13.96 55.43 0.77 -25.64 15 10 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 15 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 13 H -0.26 -5.83 6.54 56.52 0.37 -5.46 15 14 C 0.15 2.98 6.87 -84.17 -0.58 2.41 15 15 C -0.12 -2.16 9.77 -39.40 -0.39 -2.54 15 16 C 0.00 0.07 6.31 -39.46 -0.25 -0.18 15 17 Cl -0.08 -1.07 28.93 -51.86 -1.50 -2.57 15 18 C -0.16 -2.28 9.74 -39.92 -0.39 -2.66 15 19 C -0.03 -0.42 10.05 -39.60 -0.40 -0.82 15 20 C -0.18 -3.25 6.33 -105.20 -0.67 -3.91 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.05 1.24 7.20 -51.92 -0.37 0.86 15 25 H 0.04 0.96 7.56 -51.93 -0.39 0.57 15 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 27 H 0.14 2.55 8.06 -52.49 -0.42 2.13 15 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 LS Contribution 274.46 15.07 4.14 4.14 Total: -1.00 -31.01 274.46 -7.29 -38.30 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.89 Total: -1.38 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -3.35 Total: -15.45 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.99 Total: -38.62 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.01 -7.29 -38.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.725 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds