Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30232 * 126.10577 * 2 1 4 4 N 1.39869 * 110.09114 * 179.97438 * 3 2 1 5 5 C 1.46495 * 125.46560 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47290 * 269.96186 * 5 4 3 7 7 H 1.07995 * 119.99979 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00108 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00066 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00002 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47280 * 89.99972 * 10 8 6 12 12 H 1.48500 * 109.47377 * 210.00090 * 10 8 6 13 13 H 1.48501 * 109.47346 * 329.99828 * 10 8 6 14 14 C 1.37053 * 109.07284 * 359.97438 * 4 3 2 15 15 C 1.39281 * 133.80271 * 179.97438 * 14 4 3 16 16 C 1.37685 * 119.72696 * 180.25556 * 15 14 4 17 17 Cl 1.73596 * 119.67998 * 179.72397 * 16 15 14 18 18 C 1.39100 * 120.64075 * 359.52528 * 16 15 14 19 19 C 1.36421 * 120.61958 * 0.45767 * 18 16 15 20 20 C 1.39933 * 119.79472 * 359.78677 * 19 18 16 21 21 H 1.09003 * 109.47212 * 270.02122 * 1 2 3 22 22 H 1.08999 * 109.47577 * 30.02438 * 1 2 3 23 23 H 1.09004 * 109.47211 * 150.02794 * 1 2 3 24 24 H 1.09010 * 109.46666 * 29.96185 * 5 4 3 25 25 H 1.08999 * 109.47027 * 149.95899 * 5 4 3 26 26 H 0.96998 * 119.99943 * 179.97438 * 9 8 6 27 27 H 1.08002 * 120.13359 * 359.97317 * 15 14 4 28 28 H 1.08001 * 119.69287 * 180.22052 * 18 16 15 29 29 H 1.07995 * 120.09824 * 179.80576 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0522 0.0000 4 7 3.6188 0.6663 0.0006 5 6 4.7650 1.5787 0.0013 6 6 5.1593 1.8910 -1.4192 7 1 4.6112 1.4533 -2.2404 8 6 6.2197 2.7356 -1.6705 9 7 6.5642 3.0078 -2.9102 10 14 7.1673 3.4932 -0.2501 11 1 8.2908 2.5990 0.1283 12 1 7.7039 4.8151 -0.6621 13 1 6.2604 3.6678 0.9128 14 6 3.6919 -0.7023 0.0016 15 6 4.7471 -1.6113 0.0020 16 6 4.4840 -2.9628 -0.0023 17 17 5.8002 -4.0947 -0.0090 18 6 3.1738 -3.4300 0.0028 19 6 2.1251 -2.5575 0.0028 20 6 2.3671 -1.1793 0.0022 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5134 24 1 4.4944 2.5015 0.5146 25 1 5.6030 1.1088 0.5161 26 1 7.3100 3.6022 -3.0869 27 1 5.7676 -1.2575 0.0011 28 1 2.9850 -4.4933 0.0029 29 1 1.1112 -2.9295 0.0037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154284.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = 51.889307 kcal Electronic energy + Delta-G solvation = -15437.768921 eV Core-core repulsion = 12772.926065 eV Total energy + Delta-G solvation = -2664.842855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22248 -38.60074 -37.07838 -35.89080 -34.37804 -31.68431 -30.88299 -30.52535 -27.89840 -24.65449 -23.85993 -22.67774 -20.70225 -19.29440 -18.02584 -17.95950 -16.69251 -16.50135 -15.95606 -15.36901 -15.18263 -14.67330 -14.36491 -14.15995 -13.91047 -13.78484 -13.38964 -13.14777 -12.98684 -12.59317 -12.36551 -12.23522 -11.94705 -11.89964 -11.77248 -11.53132 -10.96114 -10.81573 -9.52992 -8.78506 -8.46783 -6.58115 -0.15950 0.47961 1.00185 1.28468 1.30301 1.40739 1.49847 1.68552 2.20586 2.68472 2.84746 3.50395 3.62235 3.75285 4.09002 4.26263 4.43634 4.49630 4.53600 4.65532 4.74425 4.88059 5.04630 5.14147 5.16992 5.21585 5.33716 5.60712 5.80959 5.86486 6.24098 6.43757 6.80728 7.06004 8.70038 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.008145 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.575144 B = 3437.028953 C = 4691.072211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.084 3.916 3 N -0.291 5.291 4 N -0.393 5.393 5 C 0.249 3.751 6 C -0.554 4.554 7 H 0.022 0.978 8 C 0.022 3.978 9 N -0.936 5.936 10 Si 0.950 3.050 11 H -0.254 1.254 12 H -0.272 1.272 13 H -0.246 1.246 14 C 0.116 3.884 15 C -0.153 4.153 16 C 0.013 3.987 17 Cl -0.060 7.060 18 C -0.158 4.158 19 C -0.011 4.011 20 C -0.198 4.198 21 H 0.102 0.898 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.275 0.725 27 H 0.121 0.879 28 H 0.170 0.830 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 -13.423 9.471 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 N -0.105 5.105 4 N -0.178 5.178 5 C 0.128 3.872 6 C -0.592 4.592 7 H 0.040 0.960 8 C -0.178 4.178 9 N -0.574 5.574 10 Si 0.771 3.229 11 H -0.179 1.179 12 H -0.197 1.197 13 H -0.169 1.169 14 C -0.002 4.002 15 C -0.176 4.176 16 C -0.016 4.016 17 Cl -0.031 7.031 18 C -0.178 4.178 19 C -0.031 4.031 20 C -0.206 4.206 21 H 0.120 0.880 22 H 0.093 0.907 23 H 0.128 0.872 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.188 0.812 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.483 -11.980 9.353 17.406 hybrid contribution 1.308 0.082 -0.222 1.330 sum -7.175 -11.897 9.131 16.625 Atomic orbital electron populations 1.20408 0.82029 1.04964 1.04896 1.24402 0.98594 0.87777 0.98508 1.76481 0.87958 1.25896 1.20214 1.48546 1.04124 1.03126 1.62035 1.19587 0.81556 0.89305 0.96719 1.21303 1.16334 1.30366 0.91246 0.95993 1.25841 0.97248 0.95572 0.99119 1.70028 1.29067 1.36771 1.21526 0.85685 0.79481 0.78753 0.78979 1.17864 1.19692 1.16902 1.19054 0.96604 0.84971 0.99539 1.19909 0.97788 0.91114 1.08817 1.20710 0.90297 0.88640 1.01957 1.98353 1.48114 1.59913 1.96734 1.20822 0.88789 1.02064 1.06162 1.20652 1.01199 0.88102 0.93166 1.20259 0.90644 0.95958 1.13789 0.87957 0.90663 0.87235 0.93235 0.92719 0.91620 0.86142 0.81248 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.48 71.23 0.75 -0.58 15 2 C 0.08 2.86 7.43 44.80 0.33 3.19 15 3 N -0.29 -12.90 12.40 -43.68 -0.54 -13.44 15 4 N -0.39 -18.79 3.63 -343.37 -1.25 -20.04 15 5 C 0.25 12.58 5.19 85.63 0.44 13.03 15 6 C -0.55 -33.29 9.94 25.60 0.25 -33.03 15 7 H 0.02 1.51 8.06 -2.91 -0.02 1.49 15 8 C 0.02 1.29 5.47 84.65 0.46 1.75 15 9 N -0.94 -58.46 13.96 21.45 0.30 -58.16 15 10 Si 0.95 42.61 27.47 68.60 1.88 44.50 15 11 H -0.25 -10.72 7.11 99.48 0.71 -10.01 15 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 13 H -0.25 -10.23 6.54 99.48 0.65 -9.58 15 14 C 0.12 4.84 6.87 39.21 0.27 5.11 15 15 C -0.15 -5.81 9.77 22.39 0.22 -5.60 15 16 C 0.01 0.40 6.31 22.35 0.14 0.54 15 17 Cl -0.06 -1.58 28.93 -2.72 -0.08 -1.66 15 18 C -0.16 -3.74 9.74 22.05 0.21 -3.52 15 19 C -0.01 -0.26 10.05 22.26 0.22 -0.04 15 20 C -0.20 -6.71 6.33 -20.24 -0.13 -6.83 15 21 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.11 1.53 8.14 -2.38 -0.02 1.51 15 24 H 0.05 2.47 7.20 -2.38 -0.02 2.45 15 25 H 0.06 2.57 7.56 -2.39 -0.02 2.55 15 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 27 H 0.12 4.78 8.06 -2.91 -0.02 4.76 15 28 H 0.17 2.71 8.06 -2.91 -0.02 2.68 15 29 H 0.18 2.44 8.06 -2.91 -0.02 2.42 15 Total: -1.00 -74.11 274.46 4.60 -69.51 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.11 Total: 5.28 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 3.18 Total: -25.99 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -1.49 Total: -91.64 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -74.11 4.60 -69.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154284.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.399 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds