Wall clock time and date at job start Mon Mar 30 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34925 * 119.69671 * 2 1 4 4 C 1.40504 * 120.31410 * 179.97438 * 3 2 1 5 5 C 1.36015 * 119.71069 * 0.02562 * 4 3 2 6 6 C 1.40941 * 119.33164 * 359.97438 * 5 4 3 7 7 N 1.32520 * 132.33274 * 180.02562 * 6 5 4 8 8 C 1.33587 * 109.15950 * 179.32642 * 7 6 5 9 9 C 1.50703 * 125.68691 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47249 * 270.55827 * 9 8 7 11 11 H 1.08001 * 119.99929 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00356 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99340 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00316 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47450 * 59.99529 * 14 12 10 16 16 H 1.48506 * 109.47112 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47108 * 299.99682 * 14 12 10 18 18 C 1.35195 * 108.61739 * 0.55405 * 8 7 6 19 19 Cl 1.73591 * 126.41381 * 179.55595 * 18 8 7 20 20 N 1.36548 * 119.69998 * 179.71970 * 2 1 3 21 21 H 1.09002 * 109.47152 * 90.00286 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00387 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00368 * 1 2 3 24 24 H 1.08005 * 119.84380 * 359.96994 * 3 2 1 25 25 H 1.07993 * 120.14682 * 180.02562 * 4 3 2 26 26 H 1.07997 * 120.33158 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47113 * 30.56123 * 9 8 7 28 28 H 1.09001 * 109.46755 * 150.56107 * 9 8 7 29 29 H 0.97008 * 119.99355 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1720 0.0000 4 6 3.5804 1.1872 0.0005 5 6 4.2672 0.0132 0.0005 6 6 3.5553 -1.2032 0.0005 7 7 3.9500 -2.4683 0.0010 8 6 2.8760 -3.2626 0.0156 9 6 2.8971 -4.7695 0.0215 10 6 2.9029 -5.2774 -1.3973 11 1 2.8928 -4.5789 -2.2209 12 6 2.9211 -6.6338 -1.6439 13 7 2.9339 -7.4843 -0.6408 14 14 2.9291 -7.2633 -3.4025 15 1 4.1345 -6.7548 -4.1050 16 1 2.9497 -8.7482 -3.3966 17 1 1.7098 -6.7875 -4.1041 18 6 1.7671 -2.4893 0.0123 19 17 0.1228 -3.0456 0.0163 20 7 2.1836 -1.1861 0.0058 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6279 2.1030 -0.0005 25 1 4.1127 2.1268 0.0010 26 1 5.3472 0.0131 0.0014 27 1 3.7924 -5.1183 0.5360 28 1 2.0126 -5.1431 0.5375 29 1 2.9471 -8.4387 -0.8144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:48 Heat of formation + Delta-G solvation = 74.012825 kcal Electronic energy + Delta-G solvation = -15589.841758 eV Core-core repulsion = 12925.958250 eV Total energy + Delta-G solvation = -2663.883508 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.45084 -37.52023 -36.27205 -33.85050 -33.23105 -31.26719 -29.62756 -27.54439 -26.76907 -23.65000 -22.46310 -21.51669 -19.81757 -17.62030 -16.46033 -16.31558 -15.71645 -15.46191 -14.47661 -14.43377 -13.90843 -13.41984 -13.08941 -12.49873 -12.41150 -12.18194 -11.83018 -11.63748 -11.26808 -11.02198 -10.71328 -10.64433 -10.52848 -10.41117 -9.92084 -9.45254 -9.34887 -8.35506 -8.10812 -7.34232 -5.98146 -4.00072 0.92044 1.46970 2.03020 3.14956 3.22389 3.37816 3.40939 3.45502 3.84918 4.37125 4.50453 4.59576 4.89261 5.04750 5.15255 5.35772 5.37577 5.41184 5.70632 5.72234 5.97098 6.08746 6.20098 6.26501 6.67373 7.09654 7.26748 7.57078 7.62765 7.96921 8.33897 8.42646 9.00797 9.61751 11.12476 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.006933 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.753180 B = 4037.613801 C = 4508.638517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 C -0.162 4.162 4 C -0.104 4.104 5 C -0.084 4.084 6 C 0.228 3.772 7 N -0.479 5.479 8 C 0.148 3.852 9 C 0.086 3.914 10 C -0.503 4.503 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.047 4.047 19 Cl -0.002 7.002 20 N -0.362 5.362 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.145 0.855 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 17.185 2.266 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.007 4.007 3 C -0.184 4.184 4 C -0.128 4.128 5 C -0.104 4.104 6 C -0.014 4.014 7 N -0.200 5.200 8 C 0.015 3.985 9 C 0.048 3.952 10 C -0.541 4.541 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.182 4.182 19 Cl 0.026 6.974 20 N -0.038 5.038 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.156 0.844 26 H 0.168 0.832 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.815 16.592 2.307 17.181 hybrid contribution -1.031 -0.052 -1.030 1.458 sum -4.846 16.541 1.277 17.283 Atomic orbital electron populations 1.21192 0.88387 1.04986 1.04096 1.20341 0.95180 0.84048 1.01157 1.20462 0.94689 0.96108 1.07107 1.20918 0.93627 0.98043 1.00202 1.20213 1.00486 0.87666 1.02053 1.20986 0.78862 0.95348 1.06157 1.70982 1.29173 0.97132 1.22696 1.21904 0.84468 0.98909 0.93221 1.17924 0.99302 0.79392 0.98581 1.20831 1.50992 0.91407 0.90912 0.92775 1.24922 0.95211 0.96693 0.97209 1.69944 1.50514 1.02294 1.30534 0.86585 0.78685 0.77513 0.84839 1.20181 1.21201 1.20235 1.21316 0.89037 0.81999 1.25893 1.98314 1.14663 1.86695 1.97722 1.42609 1.09110 1.04511 1.47569 0.89837 0.89630 0.89677 0.83751 0.84376 0.83244 0.93947 0.93849 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.44 36.01 0.34 -1.11 15 2 C 0.10 1.38 6.78 -81.67 -0.55 0.83 15 3 C -0.16 -1.83 9.59 -39.90 -0.38 -2.21 15 4 C -0.10 -1.17 10.07 -39.53 -0.40 -1.56 15 5 C -0.08 -1.21 10.11 -39.36 -0.40 -1.61 15 6 C 0.23 4.44 7.81 -155.97 -1.22 3.23 15 7 N -0.48 -11.22 11.32 -8.95 -0.10 -11.32 15 8 C 0.15 3.61 6.25 -82.91 -0.52 3.09 15 9 C 0.09 2.33 5.34 -29.03 -0.16 2.18 15 10 C -0.50 -14.58 9.09 -34.44 -0.31 -14.89 15 11 H 0.05 1.59 7.74 -52.49 -0.41 1.18 15 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 13 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 14 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 18 C -0.05 -0.99 7.48 -16.41 -0.12 -1.11 15 19 Cl 0.00 -0.04 25.81 -51.86 -1.34 -1.38 15 20 N -0.36 -6.73 2.95 -55.29 -0.16 -6.89 15 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 0.68 8.07 -51.93 -0.42 0.26 15 23 H 0.08 1.07 5.37 -51.93 -0.28 0.79 15 24 H 0.14 1.09 8.06 -52.48 -0.42 0.67 15 25 H 0.14 1.03 8.06 -52.49 -0.42 0.61 15 26 H 0.15 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.04 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.04 1.19 7.89 -51.93 -0.41 0.78 15 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -32.67 269.48 -8.41 -41.08 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -2.76 Total: -5.16 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.82 Total: -11.51 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.47 Total: -44.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.34 Total: -1.38 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.67 -8.41 -41.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.088 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds