Wall clock time and date at job start Mon Mar 30 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34925 * 119.69671 * 2 1 4 4 C 1.40504 * 120.31410 * 179.97438 * 3 2 1 5 5 C 1.36015 * 119.71069 * 0.02562 * 4 3 2 6 6 C 1.40941 * 119.33164 * 359.97438 * 5 4 3 7 7 N 1.32520 * 132.33274 * 180.02562 * 6 5 4 8 8 C 1.33587 * 109.15950 * 179.32642 * 7 6 5 9 9 C 1.50703 * 125.68691 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47249 * 270.55827 * 9 8 7 11 11 H 1.08001 * 119.99929 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00356 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99340 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00316 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47450 * 59.99529 * 14 12 10 16 16 H 1.48506 * 109.47112 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47108 * 299.99682 * 14 12 10 18 18 C 1.35195 * 108.61739 * 0.55405 * 8 7 6 19 19 Cl 1.73591 * 126.41381 * 179.55595 * 18 8 7 20 20 N 1.36548 * 119.69998 * 179.71970 * 2 1 3 21 21 H 1.09002 * 109.47152 * 90.00286 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00387 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00368 * 1 2 3 24 24 H 1.08005 * 119.84380 * 359.96994 * 3 2 1 25 25 H 1.07993 * 120.14682 * 180.02562 * 4 3 2 26 26 H 1.07997 * 120.33158 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47113 * 30.56123 * 9 8 7 28 28 H 1.09001 * 109.46755 * 150.56107 * 9 8 7 29 29 H 0.97008 * 119.99355 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1720 0.0000 4 6 3.5804 1.1872 0.0005 5 6 4.2672 0.0132 0.0005 6 6 3.5553 -1.2032 0.0005 7 7 3.9500 -2.4683 0.0010 8 6 2.8760 -3.2626 0.0156 9 6 2.8971 -4.7695 0.0215 10 6 2.9029 -5.2774 -1.3973 11 1 2.8928 -4.5789 -2.2209 12 6 2.9211 -6.6338 -1.6439 13 7 2.9339 -7.4843 -0.6408 14 14 2.9291 -7.2633 -3.4025 15 1 4.1345 -6.7548 -4.1050 16 1 2.9497 -8.7482 -3.3966 17 1 1.7098 -6.7875 -4.1041 18 6 1.7671 -2.4893 0.0123 19 17 0.1228 -3.0456 0.0163 20 7 2.1836 -1.1861 0.0058 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6279 2.1030 -0.0005 25 1 4.1127 2.1268 0.0010 26 1 5.3472 0.0131 0.0014 27 1 3.7924 -5.1183 0.5360 28 1 2.0126 -5.1431 0.5375 29 1 2.9471 -8.4387 -0.8144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260157400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:48 Heat of formation + Delta-G solvation = 54.046892 kcal Electronic energy + Delta-G solvation = -15590.707546 eV Core-core repulsion = 12925.958250 eV Total energy + Delta-G solvation = -2664.749295 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.83602 -38.77644 -37.76090 -35.37035 -34.97119 -32.82028 -31.20328 -29.04466 -28.00485 -25.61995 -23.74244 -22.82340 -21.44453 -18.89702 -18.56445 -17.58503 -17.18445 -16.76380 -16.36244 -15.69791 -15.03761 -14.61099 -14.36836 -14.15080 -13.94836 -13.62098 -13.27420 -13.14628 -12.83171 -12.63211 -12.58220 -12.26269 -11.95621 -11.82309 -11.75236 -11.48577 -10.97289 -10.58981 -9.55765 -8.70898 -8.19417 -6.31133 -0.17482 0.21545 0.54274 1.38273 1.42613 1.50190 1.77370 1.85826 2.41778 2.56049 3.10736 3.26970 3.41552 3.83345 3.94340 4.19216 4.43328 4.51166 4.57443 4.65787 4.72284 5.01626 5.14403 5.22637 5.24436 5.38515 5.51877 5.65041 5.71217 6.08183 6.14477 6.74589 6.86333 7.35035 8.90997 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.006933 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.753180 B = 4037.613801 C = 4508.638517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.066 3.934 3 C -0.139 4.139 4 C -0.063 4.063 5 C -0.117 4.117 6 C 0.223 3.777 7 N -0.535 5.535 8 C 0.106 3.894 9 C 0.100 3.900 10 C -0.520 4.520 11 H 0.043 0.957 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.274 1.274 17 H -0.267 1.267 18 C -0.056 4.056 19 Cl 0.009 6.991 20 N -0.364 5.364 21 H 0.089 0.911 22 H 0.126 0.874 23 H 0.064 0.936 24 H 0.199 0.801 25 H 0.193 0.807 26 H 0.166 0.834 27 H 0.005 0.995 28 H 0.027 0.973 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 21.074 1.252 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.038 4.038 3 C -0.159 4.159 4 C -0.087 4.087 5 C -0.137 4.137 6 C -0.019 4.019 7 N -0.257 5.257 8 C -0.027 4.027 9 C 0.062 3.938 10 C -0.558 4.558 11 H 0.061 0.939 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.789 3.211 15 H -0.198 1.198 16 H -0.199 1.199 17 H -0.191 1.191 18 C -0.192 4.192 19 Cl 0.038 6.962 20 N -0.039 5.039 21 H 0.108 0.892 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.216 0.784 25 H 0.210 0.790 26 H 0.183 0.817 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.575 20.502 1.300 21.046 hybrid contribution -0.812 -0.947 -0.653 1.408 sum -5.387 19.554 0.647 20.293 Atomic orbital electron populations 1.21287 0.86407 1.06014 1.04790 1.21249 0.96974 0.83313 1.02226 1.21256 0.95047 0.96763 1.02834 1.21632 0.93842 0.98662 0.94525 1.20641 1.01595 0.86875 1.04629 1.21689 0.79829 0.95485 1.04944 1.70771 1.29845 0.99230 1.25887 1.21318 0.86578 0.97728 0.97099 1.17483 0.96572 0.82424 0.97280 1.21024 1.51499 0.91827 0.91459 0.93867 1.25822 0.94407 0.96691 1.01851 1.70063 1.50896 1.02717 1.32851 0.85506 0.79005 0.77336 0.79240 1.19761 1.19925 1.19141 1.21019 0.88904 0.83150 1.26157 1.98295 1.13265 1.86944 1.97733 1.42698 1.09060 1.04797 1.47345 0.89228 0.85513 0.91708 0.78402 0.78990 0.81659 0.97630 0.95523 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.44 71.24 0.67 -1.78 15 2 C 0.07 1.65 6.78 41.06 0.28 1.93 15 3 C -0.14 -2.27 9.59 22.06 0.21 -2.06 15 4 C -0.06 -1.04 10.07 22.31 0.22 -0.82 15 5 C -0.12 -3.10 10.11 22.42 0.23 -2.88 15 6 C 0.22 8.75 7.81 134.08 1.05 9.80 15 7 N -0.54 -26.62 11.32 -182.23 -2.06 -28.68 15 8 C 0.11 5.52 6.25 41.59 0.26 5.78 15 9 C 0.10 5.91 5.34 29.10 0.16 6.07 15 10 C -0.52 -31.82 9.09 25.60 0.23 -31.59 15 11 H 0.04 2.67 7.74 -2.91 -0.02 2.65 15 12 C 0.01 0.65 5.46 84.65 0.46 1.11 15 13 N -0.93 -57.39 13.29 21.45 0.28 -57.11 15 14 Si 0.97 46.23 29.54 68.60 2.03 48.26 15 15 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 18 C -0.06 -2.46 7.48 83.21 0.62 -1.84 15 19 Cl 0.01 0.36 25.81 -2.72 -0.07 0.29 15 20 N -0.36 -13.43 2.95 -328.83 -0.97 -14.40 15 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.13 1.33 8.07 -2.39 -0.02 1.31 15 23 H 0.06 1.54 5.37 -2.38 -0.01 1.52 15 24 H 0.20 1.23 8.06 -2.91 -0.02 1.21 15 25 H 0.19 1.24 8.06 -2.91 -0.02 1.21 15 26 H 0.17 3.72 8.06 -2.91 -0.02 3.69 15 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 28 H 0.03 1.60 7.89 -2.39 -0.02 1.58 15 29 H 0.27 15.46 8.31 -92.70 -0.77 14.69 15 Total: -1.00 -78.35 269.48 4.77 -73.58 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: 1.17 Total: -5.67 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.39 Total: -16.28 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -2.75 Total: -100.19 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.07 Total: 0.29 kcal Total: -78.35 4.77 -73.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.628 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds