Wall clock time and date at job start Mon Mar 30 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39319 * 125.82331 * 2 1 4 4 C 1.38740 * 133.25162 * 359.97438 * 3 2 1 5 5 C 1.37994 * 119.93969 * 179.97438 * 4 3 2 6 6 C 1.39068 * 120.21215 * 0.02562 * 5 4 3 7 7 O 1.35781 * 119.93087 * 180.02562 * 6 5 4 8 8 C 1.34813 * 117.00513 * 185.52474 * 7 6 5 9 9 H 1.08007 * 119.99776 * 354.91147 * 8 7 6 10 10 C 1.38620 * 120.00512 * 174.64407 * 8 7 6 11 11 N 1.31585 * 119.99678 * 0.27069 * 10 8 7 12 12 Si 1.86798 * 120.00475 * 180.27182 * 10 8 7 13 13 H 1.48501 * 109.47051 * 59.99943 * 12 10 8 14 14 H 1.48496 * 109.47575 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47106 * 300.00204 * 12 10 8 16 16 C 1.38726 * 120.14385 * 0.27249 * 6 5 4 17 17 C 1.38572 * 119.79604 * 359.45530 * 16 6 5 18 18 N 1.39239 * 133.27311 * 180.21143 * 17 16 6 19 19 H 0.97006 * 125.81363 * 0.32928 * 18 17 16 20 20 C 1.34628 * 125.81993 * 179.97438 * 2 1 3 21 21 S 1.71203 * 125.15484 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.46594 * 90.00404 * 1 2 3 23 23 H 1.08995 * 109.47226 * 210.00317 * 1 2 3 24 24 H 1.09001 * 109.47180 * 330.00721 * 1 2 3 25 25 H 1.08003 * 120.02965 * 359.97438 * 4 3 2 26 26 H 1.07989 * 119.89505 * 179.97438 * 5 4 3 27 27 H 0.97006 * 119.99671 * 179.97438 * 11 10 8 28 28 H 1.08001 * 120.10741 * 179.70903 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2804 1.1296 0.0000 4 6 2.0175 2.4919 -0.0005 5 6 3.0611 3.3947 0.0002 6 6 4.3766 2.9438 0.0008 7 8 5.3991 3.8372 0.0020 8 6 6.6468 3.3397 -0.1131 9 1 6.8037 2.2711 -0.1181 10 6 7.7277 4.1995 -0.2306 11 7 7.5365 5.5014 -0.2245 12 14 9.4558 3.5102 -0.3978 13 1 9.5358 2.6647 -1.6160 14 1 10.4266 4.6285 -0.5062 15 1 9.7788 2.6889 0.7967 16 6 4.6465 1.5830 -0.0050 17 6 3.6010 0.6736 0.0001 18 7 3.5463 -0.7177 0.0003 19 1 4.3100 -1.3159 0.0011 20 6 2.2529 -1.0916 0.0005 21 16 1.6948 -2.7102 0.0006 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 0.9969 2.8454 -0.0013 26 1 2.8556 4.4549 -0.0005 27 1 8.2930 6.1031 -0.3064 28 1 5.6684 1.2335 -0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260194434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:59 Heat of formation + Delta-G solvation = 24.424424 kcal Electronic energy + Delta-G solvation = -15421.792940 eV Core-core repulsion = 12757.802824 eV Total energy + Delta-G solvation = -2663.990116 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.60538 -40.41592 -37.30939 -36.36116 -34.30106 -31.33087 -30.51302 -28.71290 -27.47990 -24.68155 -23.76042 -22.78602 -20.47383 -19.86220 -18.70305 -18.34383 -17.36143 -16.93665 -16.67620 -16.19873 -15.80297 -15.59217 -15.09628 -14.59567 -14.38326 -13.83658 -13.60465 -13.26917 -12.97353 -12.69426 -12.60805 -12.53599 -12.17999 -11.80728 -11.49834 -10.87536 -10.03227 -9.36670 -9.08265 -8.54482 -8.51858 -6.20020 -0.31648 0.32142 0.47190 0.75848 1.37683 1.45402 1.49653 1.51780 1.73647 2.14101 2.56758 3.03194 3.33013 3.35191 3.56938 4.04674 4.17541 4.25111 4.39438 4.44675 4.58514 4.73596 4.86297 5.03880 5.15901 5.30608 5.39461 5.54691 5.88616 5.92534 5.94561 6.91768 7.62990 8.67741 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036090 B = 0.005458 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.653072 B = 5128.732556 C = 5885.718944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.445 5.445 3 C -0.009 4.009 4 C -0.026 4.026 5 C -0.153 4.153 6 C 0.145 3.855 7 O -0.206 6.206 8 C -0.415 4.415 9 H 0.106 0.894 10 C -0.011 4.011 11 N -0.908 5.908 12 Si 1.011 2.989 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.258 1.258 16 C -0.234 4.234 17 C 0.119 3.881 18 N -0.565 5.565 19 H 0.450 0.550 20 C 0.500 3.500 21 S -0.707 6.707 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.182 0.818 26 H 0.152 0.848 27 H 0.276 0.724 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 -3.493 0.183 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.137 5.137 3 C -0.113 4.113 4 C -0.047 4.047 5 C -0.173 4.173 6 C 0.091 3.909 7 O -0.111 6.111 8 C -0.491 4.491 9 H 0.123 0.877 10 C -0.211 4.211 11 N -0.544 5.544 12 Si 0.830 3.170 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.183 1.183 16 C -0.257 4.257 17 C 0.013 3.987 18 N -0.184 5.184 19 H 0.295 0.705 20 C 0.139 3.861 21 S -0.578 6.578 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.199 0.801 26 H 0.170 0.830 27 H 0.085 0.915 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.360 -4.030 0.188 10.192 hybrid contribution 1.773 0.183 -0.073 1.784 sum -7.587 -3.847 0.115 8.507 Atomic orbital electron populations 1.22503 0.71101 1.06909 1.05865 1.44980 1.09114 1.02104 1.57453 1.18337 0.87160 0.90099 1.15694 1.20073 1.00887 0.86269 0.97428 1.20490 0.88220 1.01401 1.07204 1.19493 0.89954 0.88214 0.93268 1.83993 1.14340 1.33195 1.79522 1.21763 0.80179 0.94288 1.52870 0.87674 1.26452 1.03881 0.95310 0.95482 1.70146 1.33841 1.03368 1.47040 0.84741 0.74371 0.77987 0.79851 1.18314 1.19796 1.18268 1.19900 0.98188 0.91171 1.16439 1.18062 0.94687 0.82508 1.03481 1.42860 1.07369 1.06084 1.62052 0.70465 1.22174 0.82645 0.92510 0.88820 1.93394 1.83321 1.00493 1.80548 0.88440 0.88398 0.85716 0.80106 0.83009 0.91532 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.85 127.77 1.39 2.64 15 2 N -0.45 -11.45 3.19 -542.38 -1.73 -13.18 15 3 C -0.01 -0.26 6.83 38.43 0.26 0.00 15 4 C -0.03 -0.61 10.01 22.33 0.22 -0.39 15 5 C -0.15 -4.71 9.98 22.41 0.22 -4.48 15 6 C 0.14 5.81 6.65 22.59 0.15 5.96 15 7 O -0.21 -10.50 9.75 -22.91 -0.22 -10.72 15 8 C -0.42 -21.17 9.48 67.91 0.64 -20.53 15 9 H 0.11 4.85 5.19 -2.91 -0.02 4.84 15 10 C -0.01 -0.58 5.49 84.82 0.47 -0.11 15 11 N -0.91 -50.37 13.67 21.61 0.30 -50.07 15 12 Si 1.01 38.79 29.55 68.60 2.03 40.82 15 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 14 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 15 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 16 C -0.23 -8.52 9.18 22.47 0.21 -8.32 15 17 C 0.12 3.76 7.25 38.40 0.28 4.03 15 18 N -0.57 -16.59 6.15 -190.30 -1.17 -17.76 15 19 H 0.45 11.43 8.96 -92.70 -0.83 10.60 15 20 C 0.50 15.59 7.97 179.15 1.43 17.02 15 21 S -0.71 -26.29 30.22 -56.49 -1.71 -28.00 15 22 H 0.10 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.10 1.83 7.55 -2.39 -0.02 1.81 15 24 H 0.12 1.20 8.14 -2.39 -0.02 1.18 15 25 H 0.18 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.15 4.26 8.06 -2.92 -0.02 4.24 15 27 H 0.28 14.11 8.31 -92.70 -0.77 13.34 15 28 H 0.14 5.00 5.62 -2.91 -0.02 4.98 15 Total: -1.00 -68.34 265.59 3.15 -65.19 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.38 Total: 17.89 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.27 Total: -4.17 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.60 Total: -81.01 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.22 Total: -10.72 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: -26.29 SS G_CDS: -1.71 Total: -28.00 kcal Total: -68.34 3.15 -65.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.613 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds