Wall clock time and date at job start Mon Mar 30 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.36626 * 120.07708 * 264.72516 * 11 10 9 13 13 C 1.38925 * 120.81415 * 179.72802 * 12 11 10 14 14 C 1.36509 * 120.62369 * 0.56574 * 13 12 11 15 15 C 1.39884 * 119.63841 * 359.71804 * 14 13 12 16 16 C 1.46009 * 134.03479 * 179.97438 * 15 14 13 17 17 Cl 1.73606 * 126.11927 * 359.97438 * 16 15 14 18 18 N 1.30299 * 107.76386 * 179.97438 * 16 15 14 19 19 N 1.39874 * 110.08868 * 0.02562 * 18 16 15 20 20 H 0.97000 * 125.44962 * 180.02562 * 19 18 16 21 21 C 1.37048 * 109.09776 * 359.97438 * 19 18 16 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07999 * 119.59451 * 0.02562 * 12 11 10 28 28 H 1.07996 * 119.68751 * 180.30422 * 13 12 11 29 29 H 1.08002 * 120.18096 * 179.68759 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2438 -5.6142 1.1787 13 6 0.5458 -6.8152 1.1976 14 6 0.1024 -7.3802 0.0367 15 6 0.3488 -6.7399 -1.1824 16 6 0.0305 -7.0488 -2.5735 17 17 -0.8311 -8.4453 -3.1403 18 7 0.5088 -6.0888 -3.3133 19 7 1.1409 -5.1333 -2.5109 20 1 1.5731 -4.3263 -2.8317 21 6 1.0508 -5.5190 -1.1989 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.5906 -5.1843 2.1068 28 1 0.3558 -7.3086 2.1393 29 1 -0.4351 -8.3166 0.0593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197671.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:25 Heat of formation + Delta-G solvation = 60.118126 kcal Electronic energy + Delta-G solvation = -15220.808716 eV Core-core repulsion = 12556.322689 eV Total energy + Delta-G solvation = -2664.486027 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18405 -37.39715 -36.77252 -34.33090 -32.50834 -30.66458 -29.65275 -28.62247 -25.15819 -22.69380 -22.12366 -21.54438 -20.27105 -17.49688 -16.72611 -16.23901 -15.19316 -15.01170 -14.99505 -14.52823 -14.05735 -13.26963 -12.73612 -12.60742 -12.20002 -11.90076 -11.69464 -11.66514 -11.36615 -10.96864 -10.91440 -10.68613 -10.52992 -10.02344 -9.91032 -9.50325 -9.20355 -8.51465 -8.43004 -7.63883 -6.07687 -4.12201 1.06066 1.44274 1.67790 2.41655 3.09997 3.27824 3.33156 3.34765 3.96502 4.38977 4.56900 4.91364 5.16894 5.19520 5.27772 5.52633 5.54610 5.89432 6.05987 6.11586 6.39791 6.47544 6.64453 6.82609 6.84453 7.00688 7.38464 7.55152 7.56081 7.66910 7.90199 8.29593 8.94599 9.52807 11.02952 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.005123 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.418423 B = 5464.091165 C = 5949.841113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.079 4.079 11 C -0.073 4.073 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.060 4.060 15 C -0.167 4.167 16 C 0.134 3.866 17 Cl 0.011 6.989 18 N -0.234 5.234 19 N -0.482 5.482 20 H 0.450 0.550 21 C 0.144 3.856 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.013 0.987 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -15.346 -1.034 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.116 4.116 11 C -0.077 4.077 12 C -0.098 4.098 13 C -0.164 4.164 14 C -0.080 4.080 15 C -0.176 4.176 16 C -0.069 4.069 17 Cl 0.038 6.962 18 N -0.054 5.054 19 N -0.201 5.201 20 H 0.297 0.703 21 C 0.028 3.972 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.504 -14.906 -2.294 15.090 hybrid contribution 0.369 1.035 0.452 1.188 sum 0.873 -13.871 -1.842 14.020 Atomic orbital electron populations 1.69957 1.06087 1.26894 1.50143 1.25026 0.94837 0.99303 0.95124 0.86647 0.79584 0.83049 0.78667 1.20228 1.21248 1.20140 1.21184 0.93005 0.90870 1.51496 0.92575 1.19082 0.93567 0.90444 0.97618 1.20814 0.98323 0.90840 1.01637 1.19206 1.01143 0.97984 0.89339 1.20721 0.97450 0.94410 0.97232 1.20649 1.01146 0.96883 0.97747 1.20172 0.98738 0.99120 0.89965 1.19397 1.08145 0.97844 0.92173 1.23620 1.00486 0.92206 0.90576 1.98376 1.73493 1.34846 1.89442 1.76439 1.11111 0.99005 1.18807 1.45765 1.50522 1.21689 1.02105 0.70253 1.18611 0.98168 0.93979 0.86401 0.92806 0.96107 0.96829 0.92715 0.91353 0.85083 0.85645 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.03 0.74 4.95 -27.88 -0.14 0.60 15 10 C -0.08 -1.52 5.29 -27.89 -0.15 -1.67 15 11 C -0.07 -1.27 5.12 -104.83 -0.54 -1.81 15 12 C -0.08 -1.17 9.58 -39.91 -0.38 -1.55 15 13 C -0.14 -1.89 9.97 -39.95 -0.40 -2.29 15 14 C -0.06 -0.81 10.06 -39.59 -0.40 -1.21 15 15 C -0.17 -2.67 6.37 -105.18 -0.67 -3.34 15 16 C 0.13 2.08 8.09 -15.09 -0.12 1.96 15 17 Cl 0.01 0.13 29.33 -51.86 -1.52 -1.39 15 18 N -0.23 -3.94 12.55 34.13 0.43 -3.51 15 19 N -0.48 -8.16 7.37 32.36 0.24 -7.92 15 20 H 0.45 6.99 8.96 -182.77 -1.64 5.36 15 21 C 0.14 2.51 7.03 -84.17 -0.59 1.92 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 15 25 H 0.05 1.01 8.12 -51.93 -0.42 0.59 15 26 H 0.07 1.26 8.04 -51.93 -0.42 0.84 15 27 H 0.13 1.76 8.05 -52.49 -0.42 1.34 15 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -30.16 276.04 -8.91 -39.06 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.13 Total: -0.40 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -3.80 Total: -20.49 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 1.40 Total: -37.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.16 -8.91 -39.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197671.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.181 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds