Wall clock time and date at job start Mon Mar 30 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.36626 * 120.07708 * 264.72516 * 11 10 9 13 13 C 1.38925 * 120.81415 * 179.72802 * 12 11 10 14 14 C 1.36509 * 120.62369 * 0.56574 * 13 12 11 15 15 C 1.39884 * 119.63841 * 359.71804 * 14 13 12 16 16 C 1.46009 * 134.03479 * 179.97438 * 15 14 13 17 17 Cl 1.73606 * 126.11927 * 359.97438 * 16 15 14 18 18 N 1.30299 * 107.76386 * 179.97438 * 16 15 14 19 19 N 1.39874 * 110.08868 * 0.02562 * 18 16 15 20 20 H 0.97000 * 125.44962 * 180.02562 * 19 18 16 21 21 C 1.37048 * 109.09776 * 359.97438 * 19 18 16 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07999 * 119.59451 * 0.02562 * 12 11 10 28 28 H 1.07996 * 119.68751 * 180.30422 * 13 12 11 29 29 H 1.08002 * 120.18096 * 179.68759 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2438 -5.6142 1.1787 13 6 0.5458 -6.8152 1.1976 14 6 0.1024 -7.3802 0.0367 15 6 0.3488 -6.7399 -1.1824 16 6 0.0305 -7.0488 -2.5735 17 17 -0.8311 -8.4453 -3.1403 18 7 0.5088 -6.0888 -3.3133 19 7 1.1409 -5.1333 -2.5109 20 1 1.5731 -4.3263 -2.8317 21 6 1.0508 -5.5190 -1.1989 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.5906 -5.1843 2.1068 28 1 0.3558 -7.3086 2.1393 29 1 -0.4351 -8.3166 0.0593 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197671.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:25 Heat of formation + Delta-G solvation = 42.618065 kcal Electronic energy + Delta-G solvation = -15221.567576 eV Core-core repulsion = 12556.322689 eV Total energy + Delta-G solvation = -2665.244887 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.38986 -38.60384 -37.87011 -36.01826 -34.26337 -32.11538 -30.88376 -30.10134 -26.94434 -24.08695 -23.48632 -22.90062 -21.72440 -18.79999 -18.46478 -17.71947 -16.57559 -16.35952 -16.21163 -16.16576 -15.29015 -14.79211 -14.38425 -14.22771 -13.62314 -13.21604 -12.95768 -12.94859 -12.83015 -12.72212 -12.50772 -12.11455 -11.83968 -11.74143 -11.59503 -11.20434 -10.89049 -10.57389 -9.71763 -8.87689 -8.21193 -6.33699 -0.13112 0.29406 0.51438 1.20218 1.39789 1.41932 1.49968 1.88580 2.39272 2.79781 3.11876 3.38697 3.68946 4.01183 4.06328 4.31632 4.40130 4.61619 4.78659 4.82913 4.94823 5.13626 5.21739 5.47098 5.47985 5.56513 5.75420 5.81645 5.88367 6.15524 6.20144 6.33027 6.83680 7.36364 8.89540 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.033230 B = 0.005123 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.418423 B = 5464.091165 C = 5949.841113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.039 3.961 10 C -0.062 4.062 11 C -0.105 4.105 12 C -0.073 4.073 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.183 4.183 16 C 0.134 3.866 17 Cl 0.040 6.960 18 N -0.257 5.257 19 N -0.494 5.494 20 H 0.449 0.551 21 C 0.124 3.876 22 H 0.263 0.737 23 H -0.007 1.007 24 H -0.016 1.016 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.166 0.834 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -16.629 -0.093 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.100 4.100 11 C -0.108 4.108 12 C -0.093 4.093 13 C -0.159 4.159 14 C -0.071 4.071 15 C -0.191 4.191 16 C -0.069 4.069 17 Cl 0.068 6.932 18 N -0.076 5.076 19 N -0.212 5.212 20 H 0.296 0.704 21 C 0.008 3.992 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.002 0.998 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.976 -16.207 -1.353 16.293 hybrid contribution 0.159 1.304 0.180 1.326 sum 1.135 -14.903 -1.172 14.992 Atomic orbital electron populations 1.70103 1.07888 1.27812 1.51506 1.25968 0.95667 1.03344 0.94714 0.85531 0.78263 0.78168 0.79282 1.19238 1.21182 1.18892 1.21674 0.93679 0.92079 1.50707 0.91715 1.18897 0.93897 0.92286 0.94752 1.20500 0.97166 0.90162 1.02147 1.19096 1.03312 0.97904 0.90522 1.21069 0.96508 0.94907 0.96848 1.21062 0.99663 0.95878 0.99317 1.20640 0.97588 0.99837 0.88985 1.19719 1.08432 0.97715 0.93244 1.23913 0.99779 0.92570 0.90621 1.98383 1.72672 1.33002 1.89187 1.76390 1.12121 0.99643 1.19403 1.45803 1.51134 1.21980 1.02283 0.70369 1.18863 0.98906 0.94957 0.86439 0.92835 0.98856 0.99796 0.92509 0.90423 0.83635 0.81669 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 15 2 C 0.00 0.06 5.46 84.66 0.46 0.52 15 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 15 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 15 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.04 1.99 4.95 29.85 0.15 2.14 15 10 C -0.06 -2.45 5.29 29.85 0.16 -2.29 15 11 C -0.10 -3.63 5.12 -20.00 -0.10 -3.73 15 12 C -0.07 -2.07 9.58 22.06 0.21 -1.86 15 13 C -0.14 -3.19 9.97 22.03 0.22 -2.97 15 14 C -0.05 -1.21 10.06 22.26 0.22 -0.99 15 15 C -0.18 -5.62 6.37 -20.23 -0.13 -5.75 15 16 C 0.13 4.05 8.09 86.94 0.70 4.76 15 17 Cl 0.04 0.91 29.33 -2.72 -0.08 0.83 15 18 N -0.26 -8.70 12.55 -45.94 -0.58 -9.28 15 19 N -0.49 -17.23 7.37 -51.53 -0.38 -17.61 15 20 H 0.45 14.85 8.96 -213.47 -1.91 12.94 15 21 C 0.12 4.34 7.03 39.21 0.28 4.61 15 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 15 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 15 24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 15 25 H 0.06 2.15 8.12 -2.39 -0.02 2.13 15 26 H 0.08 2.84 8.04 -2.39 -0.02 2.82 15 27 H 0.15 3.62 8.05 -2.91 -0.02 3.59 15 28 H 0.17 2.45 8.06 -2.91 -0.02 2.43 15 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -65.85 276.04 2.95 -62.90 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -0.73 Total: 9.21 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 2.40 Total: -35.33 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -0.67 Total: -83.19 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -65.85 2.95 -62.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197671.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.518 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds