Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46952 * 240.00482 * 2 1 3 5 5 H 1.08003 * 119.99559 * 275.01577 * 4 2 1 6 6 C 1.37872 * 120.00077 * 95.01200 * 4 2 1 7 7 N 1.31513 * 119.99821 * 184.91192 * 6 4 2 8 8 Si 1.86795 * 120.00192 * 4.91861 * 6 4 2 9 9 H 1.48498 * 109.47622 * 84.82976 * 8 6 4 10 10 H 1.48497 * 109.47121 * 204.83183 * 8 6 4 11 11 H 1.48505 * 109.47206 * 324.83015 * 8 6 4 12 12 C 1.50698 * 109.47365 * 120.00310 * 2 1 3 13 13 C 1.33982 * 124.92592 * 239.72115 * 12 2 1 14 14 C 1.46780 * 106.18695 * 179.91439 * 13 12 2 15 15 C 1.40488 * 105.50682 * 0.33788 * 14 13 12 16 16 C 1.38903 * 119.32694 * 179.79466 * 15 14 13 17 17 C 1.37858 * 119.98466 * 359.97438 * 16 15 14 18 18 C 1.38707 * 120.70292 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.25633 * 359.97438 * 18 17 16 20 20 Cl 1.73610 * 120.20762 * 180.02562 * 19 18 17 21 21 O 1.34461 * 124.92254 * 60.02206 * 12 2 1 22 22 H 1.08999 * 109.47011 * 55.01642 * 1 2 3 23 23 H 1.09001 * 109.46800 * 175.02323 * 1 2 3 24 24 H 1.09004 * 109.46575 * 295.02129 * 1 2 3 25 25 H 0.97006 * 120.00202 * 180.02562 * 7 6 4 26 26 H 1.08007 * 126.90572 * 0.02562 * 13 12 2 27 27 H 1.08005 * 120.00550 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.64900 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.86601 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1352 -1.7854 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7062 -0.6129 -3.4622 8 14 2.3142 1.8792 -2.3171 9 1 3.5998 2.3947 -1.7817 10 1 2.1067 2.3994 -3.6924 11 1 1.1993 2.3278 -1.4447 12 6 2.0325 -0.7105 1.2304 13 6 2.8104 -0.1582 2.1711 14 6 3.0479 -1.2052 3.1721 15 6 2.3603 -2.3367 2.7024 16 6 2.3987 -3.5118 3.4422 17 6 3.1070 -3.5591 4.6239 18 6 3.7860 -2.4421 5.0879 19 6 3.7610 -1.2657 4.3692 20 17 4.6118 0.1314 4.9508 21 8 1.7697 -1.9922 1.5403 22 1 -0.3633 0.5892 -0.8420 23 1 -0.3633 -1.0238 -0.0892 24 1 -0.3632 0.4347 0.9313 25 1 2.9374 -0.1046 -4.2553 26 1 3.1856 0.8544 2.1901 27 1 1.8744 -4.3884 3.0912 28 1 3.1336 -4.4757 5.1946 29 1 4.3370 -2.4943 6.0153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209654.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = 8.409209 kcal Electronic energy + Delta-G solvation = -15477.030066 eV Core-core repulsion = 12778.009021 eV Total energy + Delta-G solvation = -2699.021045 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.01730 -37.87820 -36.20549 -34.58865 -32.31986 -31.46999 -30.02048 -28.22689 -25.37130 -23.14695 -22.47396 -21.09460 -19.99491 -17.22859 -17.14508 -16.16202 -15.69211 -15.46369 -14.58538 -14.19195 -13.70154 -13.26105 -12.95032 -12.76972 -12.58726 -12.22678 -12.04937 -11.48422 -11.17631 -11.12125 -10.94063 -10.81982 -10.76339 -10.27737 -9.90511 -9.63888 -9.32752 -8.71176 -8.37307 -7.61479 -6.24408 -4.26699 1.03448 1.47010 2.25099 2.91902 3.14315 3.22847 3.26468 3.29832 3.76521 4.25916 4.76143 4.93690 5.06312 5.11714 5.29002 5.47590 5.64157 5.84760 6.07472 6.13761 6.26881 6.32408 6.38421 6.45739 6.49350 6.74132 6.77687 6.93615 7.14644 7.43083 7.72913 8.30543 8.80777 9.33656 10.87953 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.006567 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.666075 B = 4262.984427 C = 4791.518931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.065 0.935 4 C -0.517 4.517 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.261 1.261 12 C 0.124 3.876 13 C -0.256 4.256 14 C -0.106 4.106 15 C 0.051 3.949 16 C -0.097 4.097 17 C -0.104 4.104 18 C -0.131 4.131 19 C 0.001 3.999 20 Cl -0.074 7.074 21 O -0.177 6.177 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.029 0.971 25 H 0.268 0.732 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -1.387 15.214 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.053 3.947 3 H 0.083 0.917 4 C -0.555 4.555 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.186 1.186 12 C 0.075 3.925 13 C -0.275 4.275 14 C -0.108 4.108 15 C 0.003 3.997 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.026 4.026 20 Cl -0.045 7.045 21 O -0.078 6.078 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.211 -1.423 14.886 14.955 hybrid contribution 0.355 1.183 -0.024 1.235 sum 0.566 -0.240 14.861 14.874 Atomic orbital electron populations 1.22039 0.96882 1.01601 0.99273 1.18260 0.93621 0.94727 0.88046 0.91703 1.20804 1.44832 0.95812 0.94016 0.90144 1.25014 0.93953 0.98511 0.95108 1.69877 1.44683 1.36137 1.01687 0.86932 0.79460 0.86003 0.77838 1.19658 1.20967 1.18569 1.23512 0.93715 0.79845 0.95441 1.22038 1.09086 1.00486 0.95874 1.19723 1.00339 0.95309 0.95437 1.19591 0.97403 0.95299 0.87418 1.19979 1.02065 0.95013 0.94498 1.20681 0.97735 0.98262 0.95565 1.20803 1.02246 0.91321 1.00624 1.20190 0.98700 0.89099 0.94567 1.98341 1.76137 1.41922 1.88118 1.84104 1.61253 1.28807 1.33594 0.92572 0.92662 0.95238 0.92192 0.82915 0.84807 0.84410 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.16 37.16 0.34 -2.53 15 2 C 0.07 1.66 2.35 -92.92 -0.22 1.44 15 3 H 0.07 1.44 5.23 -51.93 -0.27 1.17 15 4 C -0.52 -14.09 8.84 -34.44 -0.30 -14.39 15 5 H 0.08 2.43 8.06 -52.48 -0.42 2.01 15 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 7 N -0.89 -26.18 13.96 55.43 0.77 -25.41 15 8 Si 0.87 20.22 26.99 -169.99 -4.59 15.64 15 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 11 H -0.26 -5.66 6.82 56.52 0.39 -5.28 15 12 C 0.12 2.68 5.72 -35.81 -0.20 2.47 15 13 C -0.26 -5.08 10.90 -37.63 -0.41 -5.49 15 14 C -0.11 -1.96 6.23 -105.14 -0.65 -2.62 15 15 C 0.05 0.95 7.41 -38.49 -0.29 0.66 15 16 C -0.10 -1.40 10.06 -39.47 -0.40 -1.80 15 17 C -0.10 -1.25 10.01 -39.55 -0.40 -1.65 15 18 C -0.13 -1.69 9.82 -39.54 -0.39 -2.08 15 19 C 0.00 0.02 6.35 -39.25 -0.25 -0.23 15 20 Cl -0.07 -1.06 28.92 -51.86 -1.50 -2.56 15 21 O -0.18 -3.79 10.58 3.81 0.04 -3.75 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 26 H 0.15 2.78 8.06 -52.48 -0.42 2.36 15 27 H 0.13 1.62 8.06 -52.48 -0.42 1.20 15 28 H 0.14 1.15 8.06 -52.48 -0.42 0.72 15 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 272.06 15.07 4.10 4.10 Total: -1.00 -29.23 272.06 -7.24 -36.47 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.81 Total: -0.32 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.27 Total: -24.16 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.77 Total: -25.41 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.59 Total: 15.64 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.23 -7.24 -36.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209654.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.880 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds