Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46952 * 240.00482 * 2 1 3 5 5 H 1.08003 * 119.99559 * 275.01577 * 4 2 1 6 6 C 1.37872 * 120.00077 * 95.01200 * 4 2 1 7 7 N 1.31513 * 119.99821 * 184.91192 * 6 4 2 8 8 Si 1.86795 * 120.00192 * 4.91861 * 6 4 2 9 9 H 1.48498 * 109.47622 * 84.82976 * 8 6 4 10 10 H 1.48497 * 109.47121 * 204.83183 * 8 6 4 11 11 H 1.48505 * 109.47206 * 324.83015 * 8 6 4 12 12 C 1.50698 * 109.47365 * 120.00310 * 2 1 3 13 13 C 1.33982 * 124.92592 * 239.72115 * 12 2 1 14 14 C 1.46780 * 106.18695 * 179.91439 * 13 12 2 15 15 C 1.40488 * 105.50682 * 0.33788 * 14 13 12 16 16 C 1.38903 * 119.32694 * 179.79466 * 15 14 13 17 17 C 1.37858 * 119.98466 * 359.97438 * 16 15 14 18 18 C 1.38707 * 120.70292 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.25633 * 359.97438 * 18 17 16 20 20 Cl 1.73610 * 120.20762 * 180.02562 * 19 18 17 21 21 O 1.34461 * 124.92254 * 60.02206 * 12 2 1 22 22 H 1.08999 * 109.47011 * 55.01642 * 1 2 3 23 23 H 1.09001 * 109.46800 * 175.02323 * 1 2 3 24 24 H 1.09004 * 109.46575 * 295.02129 * 1 2 3 25 25 H 0.97006 * 120.00202 * 180.02562 * 7 6 4 26 26 H 1.08007 * 126.90572 * 0.02562 * 13 12 2 27 27 H 1.08005 * 120.00550 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.64900 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.86601 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.1352 -1.7854 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7062 -0.6129 -3.4622 8 14 2.3142 1.8792 -2.3171 9 1 3.5998 2.3947 -1.7817 10 1 2.1067 2.3994 -3.6924 11 1 1.1993 2.3278 -1.4447 12 6 2.0325 -0.7105 1.2304 13 6 2.8104 -0.1582 2.1711 14 6 3.0479 -1.2052 3.1721 15 6 2.3603 -2.3367 2.7024 16 6 2.3987 -3.5118 3.4422 17 6 3.1070 -3.5591 4.6239 18 6 3.7860 -2.4421 5.0879 19 6 3.7610 -1.2657 4.3692 20 17 4.6118 0.1314 4.9508 21 8 1.7697 -1.9922 1.5403 22 1 -0.3633 0.5892 -0.8420 23 1 -0.3633 -1.0238 -0.0892 24 1 -0.3632 0.4347 0.9313 25 1 2.9374 -0.1046 -4.2553 26 1 3.1856 0.8544 2.1901 27 1 1.8744 -4.3884 3.0912 28 1 3.1336 -4.4757 5.1946 29 1 4.3370 -2.4943 6.0153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209654.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = -7.957519 kcal Electronic energy + Delta-G solvation = -15477.739780 eV Core-core repulsion = 12778.009021 eV Total energy + Delta-G solvation = -2699.730760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.42737 -39.07902 -37.36066 -36.38582 -34.02871 -33.12639 -31.20296 -29.61450 -27.33037 -24.55613 -23.80015 -22.48663 -21.56790 -19.18320 -18.47613 -17.61250 -17.14897 -16.80530 -16.12105 -15.58820 -15.27447 -14.66279 -14.56658 -14.16114 -14.13005 -13.81798 -13.27204 -13.08386 -12.84694 -12.58531 -12.29658 -12.20633 -11.99025 -11.94464 -11.79947 -11.38065 -10.89645 -10.78256 -9.60366 -8.98685 -8.35806 -6.43954 -0.17921 0.27475 1.09331 1.34172 1.36356 1.45299 1.47054 1.84700 2.30485 2.58477 3.00659 3.46464 3.76527 3.95618 4.15230 4.21409 4.34544 4.47055 4.63246 4.69962 4.76082 4.83219 5.04480 5.14248 5.20415 5.27608 5.37871 5.46170 5.49756 5.67441 6.14208 6.30129 6.61151 7.20494 8.80892 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.006567 C = 0.005842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.666075 B = 4262.984427 C = 4791.518931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.523 4.523 5 H 0.028 0.972 6 C 0.019 3.981 7 N -0.942 5.942 8 Si 0.939 3.061 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.232 1.232 12 C 0.085 3.915 13 C -0.248 4.248 14 C -0.134 4.134 15 C 0.022 3.978 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.120 4.120 19 C -0.012 4.012 20 Cl -0.065 7.065 21 O -0.205 6.205 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.270 0.730 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.189 0.811 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -0.896 18.367 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.093 0.907 4 C -0.560 4.560 5 H 0.046 0.954 6 C -0.180 4.180 7 N -0.580 5.580 8 Si 0.761 3.239 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.155 1.155 12 C 0.036 3.964 13 C -0.267 4.267 14 C -0.136 4.136 15 C -0.025 4.025 16 C -0.125 4.125 17 C -0.096 4.096 18 C -0.138 4.138 19 C -0.039 4.039 20 Cl -0.036 7.036 21 O -0.107 6.107 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.181 0.819 27 H 0.172 0.828 28 H 0.206 0.794 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.478 -0.935 18.072 18.103 hybrid contribution 0.344 0.819 -0.797 1.193 sum 0.821 -0.116 17.275 17.295 Atomic orbital electron populations 1.21916 0.95124 1.01251 1.00868 1.18157 0.94994 0.94766 0.86782 0.90704 1.20934 1.44843 0.93774 0.96449 0.95404 1.25952 0.93430 1.04264 0.94304 1.70038 1.46811 1.38476 1.02709 0.85854 0.80705 0.78920 0.78437 1.18821 1.20755 1.15493 1.23183 0.96215 0.80671 0.96285 1.22265 1.07405 1.01201 0.95784 1.19846 1.02162 0.94864 0.96687 1.20247 0.98164 0.97056 0.87070 1.20491 1.02653 0.94380 0.95001 1.21318 0.94550 0.99657 0.94034 1.21353 1.01169 0.90154 1.01142 1.20456 0.98721 0.90563 0.94113 1.98342 1.75789 1.41725 1.87773 1.84010 1.62458 1.28832 1.35363 0.92300 0.93867 0.92337 0.92059 0.81854 0.82808 0.79423 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.16 71.98 0.66 -4.82 15 2 C 0.07 3.34 2.35 -12.28 -0.03 3.31 15 3 H 0.08 3.28 5.23 -2.39 -0.01 3.26 15 4 C -0.52 -29.90 8.84 25.60 0.23 -29.67 15 5 H 0.03 1.82 8.06 -2.91 -0.02 1.80 15 6 C 0.02 1.08 5.47 84.65 0.46 1.54 15 7 N -0.94 -58.09 13.96 21.45 0.30 -57.79 15 8 Si 0.94 41.82 26.99 68.60 1.85 43.67 15 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.23 -9.18 6.82 99.48 0.68 -8.50 15 12 C 0.08 3.77 5.72 24.72 0.14 3.91 15 13 C -0.25 -9.86 10.90 23.54 0.26 -9.61 15 14 C -0.13 -4.85 6.23 -20.20 -0.13 -4.98 15 15 C 0.02 0.81 7.41 22.98 0.17 0.98 15 16 C -0.11 -2.85 10.06 22.34 0.22 -2.63 15 17 C -0.08 -1.51 10.01 22.29 0.22 -1.28 15 18 C -0.12 -2.57 9.82 22.30 0.22 -2.35 15 19 C -0.01 -0.34 6.35 22.48 0.14 -0.20 15 20 Cl -0.07 -1.72 28.92 -2.72 -0.08 -1.80 15 21 O -0.20 -9.15 10.58 -9.29 -0.10 -9.25 15 22 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.27 15.47 8.31 -92.70 -0.77 14.70 15 26 H 0.16 5.87 8.06 -2.91 -0.02 5.85 15 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 15 28 H 0.19 1.82 8.06 -2.91 -0.02 1.80 15 29 H 0.17 2.43 8.06 -2.91 -0.02 2.41 15 Total: -1.00 -68.16 272.06 5.68 -62.48 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.13 Total: 8.47 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 2.57 Total: -45.79 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.30 Total: -57.79 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.10 Total: -9.25 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.85 Total: 43.67 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -68.16 5.68 -62.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209654.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.526 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds