Wall clock time and date at job start Mon Mar 30 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47073 * 2 1 4 4 C 1.50701 * 109.47004 * 120.00406 * 2 1 3 5 5 H 1.07998 * 119.99647 * 120.00091 * 4 2 1 6 6 C 1.37870 * 120.00218 * 299.99847 * 4 2 1 7 7 N 1.31517 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00350 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46739 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46776 * 119.99869 * 8 6 4 11 11 H 1.48500 * 109.47288 * 240.00297 * 8 6 4 12 12 C 1.50703 * 109.47004 * 240.00118 * 2 1 3 13 13 C 1.33989 * 124.91752 * 119.99829 * 12 2 1 14 14 C 1.46788 * 106.18065 * 179.80444 * 13 12 2 15 15 C 1.40487 * 105.50657 * 0.34583 * 14 13 12 16 16 C 1.38908 * 119.32722 * 179.82235 * 15 14 13 17 17 C 1.37864 * 119.98308 * 359.75469 * 16 15 14 18 18 C 1.38703 * 120.70053 * 359.97308 * 17 16 15 19 19 C 1.37887 * 120.26243 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.21032 * 179.97438 * 19 18 17 21 21 O 1.34453 * 124.92464 * 300.02905 * 12 2 1 22 22 H 1.09001 * 109.46916 * 299.99421 * 1 2 3 23 23 H 1.08996 * 109.47158 * 59.99806 * 1 2 3 24 24 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00466 * 180.02562 * 7 6 4 26 26 H 1.07999 * 126.91412 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.00598 * 179.77053 * 16 15 14 28 28 H 1.07993 * 119.64605 * 180.02562 * 17 16 15 29 29 H 1.08006 * 119.86850 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1484 -2.2859 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5870 4.8164 12 6 2.0324 -0.7104 -1.2305 13 6 2.8059 -0.1564 -2.1739 14 6 3.0509 -1.2059 -3.1704 15 6 2.3587 -2.3359 -2.7037 16 6 2.3958 -3.5104 -3.4444 17 6 3.1027 -3.5571 -4.6271 18 6 3.7815 -2.4400 -5.0909 19 6 3.7578 -1.2640 -4.3713 20 17 4.6084 0.1331 -4.9528 21 8 1.7688 -1.9917 -1.5411 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1611 3.4845 26 1 3.1770 0.8576 -2.1954 27 1 1.8707 -4.3867 -3.0940 28 1 3.1275 -4.4730 -5.1988 29 1 4.3308 -2.4915 -6.0195 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209658.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:17 Heat of formation + Delta-G solvation = 7.214183 kcal Electronic energy + Delta-G solvation = -15435.200419 eV Core-core repulsion = 12736.127554 eV Total energy + Delta-G solvation = -2699.072865 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96205 -37.84163 -36.17682 -34.54691 -32.28935 -30.95373 -29.97793 -27.94735 -25.29744 -23.08390 -22.46060 -21.05521 -20.08021 -17.13866 -16.82541 -15.93242 -15.46924 -15.43208 -14.67691 -14.27030 -13.55793 -12.97239 -12.95723 -12.84164 -12.43563 -12.07350 -11.58640 -11.22375 -11.10321 -11.02994 -10.89507 -10.79119 -10.44054 -10.32980 -9.89473 -9.60463 -9.16261 -8.54288 -8.34216 -7.56068 -6.16351 -4.24703 1.06343 1.49510 2.27713 2.99763 3.23332 3.27576 3.31677 3.37385 3.79110 4.33165 4.84092 4.95674 5.10861 5.15741 5.31468 5.51376 5.73212 5.94871 6.13683 6.34793 6.36664 6.48288 6.59801 6.72639 6.82538 6.92647 7.04516 7.37964 7.62508 7.84037 7.89463 8.14822 8.76196 9.41056 10.89252 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030687 B = 0.005812 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.218693 B = 4816.749357 C = 5111.557954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.102 3.898 3 H 0.066 0.934 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.121 3.879 13 C -0.257 4.257 14 C -0.107 4.107 15 C 0.048 3.952 16 C -0.098 4.098 17 C -0.105 4.105 18 C -0.132 4.132 19 C 0.001 3.999 20 Cl -0.074 7.074 21 O -0.179 6.179 22 H 0.094 0.906 23 H 0.014 0.986 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -4.970 -12.608 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.084 3.916 3 H 0.083 0.917 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.073 3.927 13 C -0.275 4.275 14 C -0.108 4.108 15 C 0.000 4.000 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.151 4.151 19 C -0.026 4.026 20 Cl -0.045 7.045 21 O -0.079 6.079 22 H 0.113 0.887 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.172 0.828 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.198 -4.906 -12.359 13.676 hybrid contribution 0.543 -0.178 0.685 0.892 sum 3.741 -5.084 -11.674 13.271 Atomic orbital electron populations 1.21816 0.96483 1.00190 1.01066 1.17916 0.93821 0.94612 0.85250 0.91662 1.21004 1.32102 1.12899 0.89461 0.92064 1.24922 0.94722 0.94924 0.99081 1.69868 1.36175 1.22669 1.23866 0.86400 0.78729 0.79720 0.82441 1.19626 1.20793 1.20778 1.23855 0.92953 0.79505 0.96380 1.22083 1.09230 1.00332 0.95895 1.19767 1.00240 0.95399 0.95433 1.19618 0.97305 0.95360 0.87728 1.19971 1.02094 0.95033 0.94528 1.20667 0.97888 0.98263 0.95560 1.20798 1.02314 0.91341 1.00616 1.20197 0.98871 0.89072 0.94460 1.98340 1.76106 1.41920 1.88132 1.84127 1.61201 1.29169 1.33387 0.88736 0.96652 0.94635 0.92605 0.82841 0.84895 0.84480 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.95 37.16 0.33 -2.91 15 2 C 0.10 2.51 2.69 -92.92 -0.25 2.26 15 3 H 0.07 1.65 8.08 -51.93 -0.42 1.23 15 4 C -0.52 -13.90 8.55 -34.44 -0.29 -14.19 15 5 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 15 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 12 C 0.12 2.72 5.68 -35.80 -0.20 2.51 15 13 C -0.26 -5.21 10.90 -37.62 -0.41 -5.62 15 14 C -0.11 -2.00 6.23 -105.13 -0.65 -2.65 15 15 C 0.05 0.91 7.41 -38.49 -0.29 0.62 15 16 C -0.10 -1.43 10.06 -39.47 -0.40 -1.83 15 17 C -0.11 -1.29 10.01 -39.55 -0.40 -1.68 15 18 C -0.13 -1.73 9.82 -39.54 -0.39 -2.11 15 19 C 0.00 0.01 6.35 -39.25 -0.25 -0.24 15 20 Cl -0.07 -1.07 28.92 -51.86 -1.50 -2.57 15 21 O -0.18 -3.90 10.58 3.81 0.04 -3.86 15 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 15 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 24 H 0.03 0.82 8.14 -51.92 -0.42 0.40 15 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 26 H 0.15 2.89 8.06 -52.49 -0.42 2.47 15 27 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 28 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 29 H 0.13 1.36 8.06 -52.48 -0.42 0.94 15 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -27.74 272.34 -7.85 -35.59 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.81 Total: -1.28 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.29 Total: -24.19 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.74 -7.85 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209658.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.803 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds