Wall clock time and date at job start Mon Mar 30 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47073 * 2 1 4 4 C 1.50701 * 109.47004 * 120.00406 * 2 1 3 5 5 H 1.07998 * 119.99647 * 120.00091 * 4 2 1 6 6 C 1.37870 * 120.00218 * 299.99847 * 4 2 1 7 7 N 1.31517 * 119.99930 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00350 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46739 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46776 * 119.99869 * 8 6 4 11 11 H 1.48500 * 109.47288 * 240.00297 * 8 6 4 12 12 C 1.50703 * 109.47004 * 240.00118 * 2 1 3 13 13 C 1.33989 * 124.91752 * 119.99829 * 12 2 1 14 14 C 1.46788 * 106.18065 * 179.80444 * 13 12 2 15 15 C 1.40487 * 105.50657 * 0.34583 * 14 13 12 16 16 C 1.38908 * 119.32722 * 179.82235 * 15 14 13 17 17 C 1.37864 * 119.98308 * 359.75469 * 16 15 14 18 18 C 1.38703 * 120.70053 * 359.97308 * 17 16 15 19 19 C 1.37887 * 120.26243 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.21032 * 179.97438 * 19 18 17 21 21 O 1.34453 * 124.92464 * 300.02905 * 12 2 1 22 22 H 1.09001 * 109.46916 * 299.99421 * 1 2 3 23 23 H 1.08996 * 109.47158 * 59.99806 * 1 2 3 24 24 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00466 * 180.02562 * 7 6 4 26 26 H 1.07999 * 126.91412 * 359.97438 * 13 12 2 27 27 H 1.08002 * 120.00598 * 179.77053 * 16 15 14 28 28 H 1.07993 * 119.64605 * 180.02562 * 17 16 15 29 29 H 1.08006 * 119.86850 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1484 -2.2859 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5870 4.8164 12 6 2.0324 -0.7104 -1.2305 13 6 2.8059 -0.1564 -2.1739 14 6 3.0509 -1.2059 -3.1704 15 6 2.3587 -2.3359 -2.7037 16 6 2.3958 -3.5104 -3.4444 17 6 3.1027 -3.5571 -4.6271 18 6 3.7815 -2.4400 -5.0909 19 6 3.7578 -1.2640 -4.3713 20 17 4.6084 0.1331 -4.9528 21 8 1.7688 -1.9917 -1.5411 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1611 3.4845 26 1 3.1770 0.8576 -2.1954 27 1 1.8707 -4.3867 -3.0940 28 1 3.1275 -4.4730 -5.1988 29 1 4.3308 -2.4915 -6.0195 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209658.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:17 Heat of formation + Delta-G solvation = -6.522111 kcal Electronic energy + Delta-G solvation = -15435.796070 eV Core-core repulsion = 12736.127554 eV Total energy + Delta-G solvation = -2699.668516 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.40803 -39.06449 -37.35304 -36.43248 -33.86757 -32.69339 -31.18270 -29.43259 -27.33290 -24.56643 -23.81444 -22.48464 -21.68927 -18.66684 -18.46298 -17.43953 -17.04819 -16.87882 -16.24073 -15.57869 -15.04120 -14.81686 -14.36591 -14.13596 -14.02363 -13.49760 -13.15759 -12.98264 -12.86049 -12.41048 -12.31294 -12.26543 -12.14328 -11.95253 -11.76046 -11.26905 -10.85708 -10.58082 -9.59459 -8.98289 -8.19464 -6.35411 -0.16845 0.28283 1.10196 1.39121 1.39966 1.46474 1.54618 1.85488 2.39599 2.59294 3.08607 3.50815 3.77285 3.96687 4.16819 4.33903 4.43712 4.59590 4.72201 4.77301 4.91758 4.99835 5.14826 5.21611 5.28136 5.35665 5.46340 5.57553 5.72874 5.88888 6.09875 6.33755 6.68277 7.33029 8.85134 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030687 B = 0.005812 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.218693 B = 4816.749357 C = 5111.557954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.102 3.898 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.085 3.915 13 C -0.250 4.250 14 C -0.134 4.134 15 C 0.021 3.979 16 C -0.105 4.105 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.013 4.013 20 Cl -0.067 7.067 21 O -0.202 6.202 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.268 0.732 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.190 0.810 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -6.895 -14.565 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.037 3.963 13 C -0.269 4.269 14 C -0.136 4.136 15 C -0.026 4.026 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.138 4.138 19 C -0.040 4.040 20 Cl -0.038 7.038 21 O -0.104 6.104 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.207 0.793 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.152 -6.825 -14.328 16.405 hybrid contribution 0.318 0.348 1.081 1.179 sum 4.471 -6.477 -13.247 15.409 Atomic orbital electron populations 1.21642 0.96159 0.99661 1.00865 1.17666 0.94159 0.93807 0.86009 0.93557 1.21188 1.32365 1.12781 0.91007 0.93545 1.25648 0.94829 0.95590 1.01628 1.69962 1.36697 1.23522 1.24637 0.85468 0.78351 0.78601 0.79051 1.19785 1.20027 1.19970 1.23325 0.95594 0.80535 0.96805 1.22232 1.07799 1.00861 0.95982 1.19851 1.02199 0.94836 0.96671 1.20277 0.97964 0.97082 0.87301 1.20497 1.02566 0.94344 0.94908 1.21324 0.94586 0.99632 0.94032 1.21356 1.01195 0.90119 1.01109 1.20471 0.98935 0.90561 0.93999 1.98341 1.75786 1.41838 1.87791 1.84020 1.62380 1.28774 1.35232 0.90703 0.94853 0.95178 0.92293 0.82491 0.82595 0.79331 0.81270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.95 71.98 0.64 -5.52 15 2 C 0.10 5.26 2.69 -12.28 -0.03 5.23 15 3 H 0.05 2.50 8.08 -2.39 -0.02 2.48 15 4 C -0.54 -29.99 8.55 25.60 0.22 -29.77 15 5 H 0.05 2.66 7.74 -2.91 -0.02 2.64 15 6 C 0.02 1.26 5.30 84.65 0.45 1.71 15 7 N -0.91 -50.84 11.32 21.45 0.24 -50.59 15 8 Si 0.96 43.30 29.54 68.60 2.03 45.33 15 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 12 C 0.09 4.00 5.68 24.72 0.14 4.14 15 13 C -0.25 -10.50 10.90 23.54 0.26 -10.25 15 14 C -0.13 -4.98 6.23 -20.20 -0.13 -5.10 15 15 C 0.02 0.79 7.41 22.98 0.17 0.96 15 16 C -0.10 -2.77 10.06 22.34 0.22 -2.54 15 17 C -0.08 -1.50 10.01 22.29 0.22 -1.28 15 18 C -0.12 -2.58 9.82 22.30 0.22 -2.36 15 19 C -0.01 -0.39 6.35 22.49 0.14 -0.24 15 20 Cl -0.07 -1.81 28.92 -2.72 -0.08 -1.89 15 21 O -0.20 -9.16 10.58 -9.27 -0.10 -9.26 15 22 H 0.07 3.94 6.07 -2.39 -0.01 3.92 15 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.03 1.44 8.14 -2.38 -0.02 1.42 15 25 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 26 H 0.16 6.18 8.06 -2.91 -0.02 6.16 15 27 H 0.16 3.32 8.06 -2.91 -0.02 3.30 15 28 H 0.19 1.77 8.06 -2.91 -0.02 1.74 15 29 H 0.17 2.46 8.06 -2.91 -0.02 2.44 15 Total: -1.00 -62.52 272.34 5.78 -56.74 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.16 Total: 4.70 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 2.53 Total: -45.03 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.24 Total: -50.59 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.10 Total: -9.26 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -62.52 5.78 -56.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209658.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.216 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds