Wall clock time and date at job start Mon Mar 30 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38346 * 119.53062 * 2 1 4 4 C 1.38604 * 119.28611 * 179.97438 * 3 2 1 5 5 C 1.36868 * 119.84371 * 359.97438 * 4 3 2 6 6 C 1.39723 * 122.25661 * 0.02562 * 5 4 3 7 7 C 1.37475 * 119.53138 * 179.97438 * 2 1 3 8 8 C 1.47608 * 114.69813 * 180.25053 * 6 5 4 9 9 C 1.40933 * 120.91264 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00004 * 335.30897 * 9 8 6 11 11 C 1.40026 * 119.99578 * 155.30371 * 9 8 6 12 12 N 1.30793 * 119.99684 * 160.16746 * 11 9 8 13 13 Si 1.86796 * 120.00351 * 340.17291 * 11 9 8 14 14 H 1.48498 * 109.47439 * 94.16273 * 13 11 9 15 15 H 1.48496 * 109.47104 * 214.16434 * 13 11 9 16 16 H 1.48502 * 109.47033 * 334.15686 * 13 11 9 17 17 C 1.35834 * 118.16601 * 359.48491 * 8 6 5 18 18 S 1.77397 * 133.36789 * 179.97438 * 5 4 3 19 19 O 1.42104 * 107.67765 * 291.90408 * 18 5 4 20 20 O 1.42097 * 107.67402 * 68.06817 * 18 5 4 21 21 H 1.08999 * 109.46785 * 90.00070 * 1 2 3 22 22 H 1.09002 * 109.46435 * 209.99852 * 1 2 3 23 23 H 1.08996 * 109.46957 * 329.99462 * 1 2 3 24 24 H 1.08005 * 120.35779 * 359.95885 * 3 2 1 25 25 H 1.07995 * 120.07665 * 179.97438 * 4 3 2 26 26 H 1.07992 * 119.66276 * 0.02562 * 7 2 1 27 27 H 0.97004 * 120.00152 * 180.02562 * 12 11 9 28 28 H 1.08002 * 128.10417 * 180.16244 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.2037 0.0000 4 6 3.5750 1.1978 0.0005 5 6 4.2510 0.0077 0.0016 6 6 3.5920 -1.2243 0.0016 7 6 2.1847 -1.1962 0.0005 8 6 4.4835 -2.4007 0.0087 9 6 3.9572 -3.7080 0.0101 10 1 2.9656 -3.8905 0.3971 11 6 4.7199 -4.7703 -0.4904 12 7 4.4290 -6.0000 -0.1531 13 14 6.1530 -4.4311 -1.6395 14 1 7.4089 -4.3427 -0.8521 15 1 6.2656 -5.5328 -2.6288 16 1 5.9237 -3.1482 -2.3515 17 6 5.8252 -2.1884 0.0036 18 16 5.9740 -0.4145 0.0020 19 8 6.5133 -0.0277 -1.2546 20 8 6.5134 -0.0249 1.2575 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6471 2.1380 -0.0007 25 1 4.1202 2.1300 0.0001 26 1 1.6316 -2.1237 0.0005 27 1 4.9576 -6.7360 -0.4995 28 1 6.6162 -2.9237 0.0051 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260209798.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:05 Heat of formation + Delta-G solvation = -37.593682 kcal Electronic energy + Delta-G solvation = -15894.420531 eV Core-core repulsion = 13195.448357 eV Total energy + Delta-G solvation = -2698.972174 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23097 -36.00502 -35.67911 -34.70606 -33.44902 -32.00341 -29.45112 -27.26161 -25.78962 -22.78098 -21.80887 -19.77380 -18.27418 -17.29465 -16.30750 -16.00519 -15.06794 -14.85830 -14.69963 -14.01063 -13.71066 -13.62174 -13.55787 -12.45222 -12.41214 -12.16077 -12.03090 -11.75217 -11.48894 -11.27686 -11.09195 -10.98506 -10.84465 -10.09451 -9.85108 -9.81488 -9.40526 -8.97392 -8.70394 -7.83476 -7.47358 -5.25557 1.01599 1.47716 1.54444 2.72622 3.08564 3.12030 3.31504 3.89726 3.95317 4.18831 4.54616 4.68779 4.91082 4.99834 5.14407 5.41517 5.57214 5.62986 5.77560 5.85913 6.00579 6.13885 6.24698 6.37018 6.51077 6.67010 6.73017 7.08029 7.22444 7.39759 7.72343 7.83944 8.29582 9.46879 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.011185 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.284481 B = 2502.724582 C = 3530.470561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 C -0.148 4.148 4 C -0.002 4.002 5 C -0.639 4.639 6 C 0.011 3.989 7 C -0.106 4.106 8 C 0.099 3.901 9 C -0.360 4.360 10 H 0.100 0.900 11 C 0.083 3.917 12 N -0.762 5.762 13 Si 0.930 3.070 14 H -0.262 1.262 15 H -0.293 1.293 16 H -0.228 1.228 17 C -0.909 4.909 18 S 2.544 3.456 19 O -0.974 6.974 20 O -0.970 6.970 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.299 0.701 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 6.267 -1.306 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.054 4.054 3 C -0.167 4.167 4 C -0.021 4.021 5 C -0.724 4.724 6 C 0.010 3.990 7 C -0.125 4.125 8 C 0.093 3.907 9 C -0.386 4.386 10 H 0.118 0.882 11 C -0.143 4.143 12 N -0.381 5.381 13 Si 0.755 3.245 14 H -0.188 1.188 15 H -0.221 1.221 16 H -0.150 1.150 17 C -1.028 5.028 18 S 2.730 3.270 19 O -0.971 6.971 20 O -0.968 6.968 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.146 0.854 25 H 0.144 0.856 26 H 0.148 0.852 27 H 0.110 0.890 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.399 6.601 -1.279 8.623 hybrid contribution -0.384 -0.800 -0.327 0.945 sum -5.782 5.801 -1.606 8.347 Atomic orbital electron populations 1.20865 0.91040 1.02890 1.02479 1.19829 0.96056 0.93057 0.96442 1.21181 0.94048 0.97409 1.04048 1.19885 0.93801 0.95446 0.92970 1.30707 1.27468 0.98760 1.15489 1.20004 0.94645 0.91549 0.92796 1.21062 0.92794 0.97801 1.00862 1.17459 0.90681 0.91965 0.90620 1.19736 1.02342 0.89506 1.26987 0.88212 1.26520 0.98280 0.93829 0.95710 1.69643 1.35611 1.00889 1.31966 0.85833 0.79443 0.79859 0.79344 1.18809 1.22057 1.15028 1.30784 1.00693 1.18641 1.52700 1.03041 0.72291 0.77850 0.73828 1.93476 1.76099 1.84561 1.42988 1.93480 1.76066 1.84285 1.42927 0.90909 0.91232 0.91451 0.85436 0.85572 0.85156 0.89019 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.98 36.01 0.36 -0.93 15 2 C -0.05 -0.83 5.85 -104.86 -0.61 -1.44 15 3 C -0.15 -2.22 9.74 -39.41 -0.38 -2.60 15 4 C 0.00 -0.04 10.01 -39.94 -0.40 -0.44 15 5 C -0.64 -13.45 6.48 -39.52 -0.26 -13.70 15 6 C 0.01 0.25 5.99 -104.57 -0.63 -0.38 15 7 C -0.11 -1.97 9.33 -38.91 -0.36 -2.33 15 8 C 0.10 2.40 5.26 -105.92 -0.56 1.84 15 9 C -0.36 -8.88 9.35 -37.89 -0.35 -9.23 15 10 H 0.10 2.41 7.53 -52.49 -0.40 2.01 15 11 C 0.08 2.02 5.43 -17.32 -0.09 1.93 15 12 N -0.76 -18.25 13.93 55.55 0.77 -17.48 15 13 Si 0.93 20.70 24.55 -169.99 -4.17 16.53 15 14 H -0.26 -5.77 6.59 56.52 0.37 -5.40 15 15 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 16 H -0.23 -5.30 6.83 56.52 0.39 -4.92 15 17 C -0.91 -22.51 8.48 29.87 0.25 -22.26 15 18 S 2.54 59.19 5.99 -107.50 -0.64 58.54 15 19 O -0.97 -24.16 18.01 -56.98 -1.03 -25.18 15 20 O -0.97 -23.99 18.01 -56.98 -1.03 -25.01 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.07 0.73 8.07 -51.93 -0.42 0.31 15 23 H 0.07 0.62 8.08 -51.93 -0.42 0.20 15 24 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.13 1.81 8.06 -52.49 -0.42 1.38 15 26 H 0.13 2.23 7.50 -52.49 -0.39 1.84 15 27 H 0.30 6.40 8.30 -40.82 -0.34 6.06 15 28 H 0.16 4.04 4.61 -52.49 -0.24 3.80 15 LS Contribution 255.26 15.07 3.85 3.85 Total: -1.00 -29.78 255.26 -7.60 -37.38 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.32 Total: 0.93 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: -3.04 Total: -49.55 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.77 Total: -17.48 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -2.05 Total: -50.20 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.17 Total: 16.53 kcal Atomic # 16 Polarization: 59.19 SS G_CDS: -0.64 Total: 58.54 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.78 -7.60 -37.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209798.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.214 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds