Wall clock time and date at job start Mon Mar 30 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38346 * 119.53062 * 2 1 4 4 C 1.38604 * 119.28611 * 179.97438 * 3 2 1 5 5 C 1.36868 * 119.84371 * 359.97438 * 4 3 2 6 6 C 1.39723 * 122.25661 * 0.02562 * 5 4 3 7 7 C 1.37475 * 119.53138 * 179.97438 * 2 1 3 8 8 C 1.47608 * 114.69813 * 180.25053 * 6 5 4 9 9 C 1.40933 * 120.91264 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00004 * 335.30897 * 9 8 6 11 11 C 1.40026 * 119.99578 * 155.30371 * 9 8 6 12 12 N 1.30793 * 119.99684 * 160.16746 * 11 9 8 13 13 Si 1.86796 * 120.00351 * 340.17291 * 11 9 8 14 14 H 1.48498 * 109.47439 * 94.16273 * 13 11 9 15 15 H 1.48496 * 109.47104 * 214.16434 * 13 11 9 16 16 H 1.48502 * 109.47033 * 334.15686 * 13 11 9 17 17 C 1.35834 * 118.16601 * 359.48491 * 8 6 5 18 18 S 1.77397 * 133.36789 * 179.97438 * 5 4 3 19 19 O 1.42104 * 107.67765 * 291.90408 * 18 5 4 20 20 O 1.42097 * 107.67402 * 68.06817 * 18 5 4 21 21 H 1.08999 * 109.46785 * 90.00070 * 1 2 3 22 22 H 1.09002 * 109.46435 * 209.99852 * 1 2 3 23 23 H 1.08996 * 109.46957 * 329.99462 * 1 2 3 24 24 H 1.08005 * 120.35779 * 359.95885 * 3 2 1 25 25 H 1.07995 * 120.07665 * 179.97438 * 4 3 2 26 26 H 1.07992 * 119.66276 * 0.02562 * 7 2 1 27 27 H 0.97004 * 120.00152 * 180.02562 * 12 11 9 28 28 H 1.08002 * 128.10417 * 180.16244 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1890 1.2037 0.0000 4 6 3.5750 1.1978 0.0005 5 6 4.2510 0.0077 0.0016 6 6 3.5920 -1.2243 0.0016 7 6 2.1847 -1.1962 0.0005 8 6 4.4835 -2.4007 0.0087 9 6 3.9572 -3.7080 0.0101 10 1 2.9656 -3.8905 0.3971 11 6 4.7199 -4.7703 -0.4904 12 7 4.4290 -6.0000 -0.1531 13 14 6.1530 -4.4311 -1.6395 14 1 7.4089 -4.3427 -0.8521 15 1 6.2656 -5.5328 -2.6288 16 1 5.9237 -3.1482 -2.3515 17 6 5.8252 -2.1884 0.0036 18 16 5.9740 -0.4145 0.0020 19 8 6.5133 -0.0277 -1.2546 20 8 6.5134 -0.0249 1.2575 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6471 2.1380 -0.0007 25 1 4.1202 2.1300 0.0001 26 1 1.6316 -2.1237 0.0005 27 1 4.9576 -6.7360 -0.4995 28 1 6.6162 -2.9237 0.0051 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260209798.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:05 Heat of formation + Delta-G solvation = -58.674355 kcal Electronic energy + Delta-G solvation = -15895.334657 eV Core-core repulsion = 13195.448357 eV Total energy + Delta-G solvation = -2699.886300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65744 -37.90855 -37.35355 -36.61388 -35.12759 -33.37540 -30.96271 -28.68288 -27.34840 -24.32814 -23.24966 -21.40376 -20.01532 -19.03849 -18.12099 -17.62012 -16.70551 -16.48878 -16.43625 -15.55214 -15.24255 -15.13523 -14.73438 -14.22232 -13.95588 -13.53087 -13.31488 -13.16381 -13.09009 -13.02967 -12.91493 -12.85301 -12.23983 -11.86919 -11.60786 -11.50400 -11.16086 -10.73764 -10.05089 -9.43506 -9.32739 -7.17033 -0.52099 -0.31652 0.15573 0.98903 1.26474 1.35241 1.52538 2.11426 2.39731 2.45106 2.74327 2.90100 3.49145 3.71887 3.89517 4.16510 4.23752 4.35576 4.54588 4.69107 4.75712 4.86562 4.95567 5.06575 5.12999 5.23161 5.25468 5.42227 5.54055 5.86651 5.90907 6.00880 6.44427 7.66959 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.011185 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.284481 B = 2502.724582 C = 3530.470561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.127 4.127 4 C -0.012 4.012 5 C -0.649 4.649 6 C -0.031 4.031 7 C -0.114 4.114 8 C 0.097 3.903 9 C -0.387 4.387 10 H 0.096 0.904 11 C 0.065 3.935 12 N -0.778 5.778 13 Si 0.956 3.044 14 H -0.265 1.265 15 H -0.265 1.265 16 H -0.250 1.250 17 C -0.942 4.942 18 S 2.557 3.443 19 O -0.997 6.997 20 O -0.993 6.993 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.181 0.819 25 H 0.158 0.842 26 H 0.135 0.865 27 H 0.311 0.689 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 8.176 -1.589 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.145 4.145 4 C -0.031 4.031 5 C -0.739 4.739 6 C -0.033 4.033 7 C -0.133 4.133 8 C 0.092 3.908 9 C -0.412 4.412 10 H 0.114 0.886 11 C -0.161 4.161 12 N -0.399 5.399 13 Si 0.780 3.220 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.174 1.174 17 C -1.060 5.060 18 S 2.746 3.254 19 O -0.994 6.994 20 O -0.991 6.991 21 H 0.109 0.891 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.198 0.802 25 H 0.175 0.825 26 H 0.153 0.847 27 H 0.123 0.877 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.784 8.468 -1.564 11.607 hybrid contribution 0.206 -1.268 -0.207 1.301 sum -7.578 7.200 -1.771 10.602 Atomic orbital electron populations 1.20989 0.87355 1.04649 1.04085 1.20406 0.98607 0.91951 0.93566 1.21809 0.92984 0.99334 1.00408 1.20491 0.95452 0.95218 0.91921 1.30319 1.24845 1.00186 1.18528 1.19970 0.96091 0.90743 0.96468 1.21329 0.91467 0.99753 1.00715 1.17766 0.91007 0.93087 0.88984 1.19849 1.02567 0.90180 1.28642 0.88623 1.26876 0.99171 0.93865 0.96171 1.69609 1.36479 1.01274 1.32511 0.85470 0.78167 0.79554 0.78849 1.19122 1.19089 1.17355 1.30985 1.01224 1.20038 1.53795 1.02306 0.73397 0.76781 0.72881 1.93433 1.77776 1.84519 1.43704 1.93436 1.77751 1.84258 1.43625 0.89123 0.90779 0.88537 0.80208 0.82462 0.84671 0.87700 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.98 71.24 0.71 -1.21 15 2 C -0.05 -1.20 5.85 -20.02 -0.12 -1.32 15 3 C -0.13 -3.13 9.74 22.38 0.22 -2.91 15 4 C -0.01 -0.38 10.01 22.04 0.22 -0.16 15 5 C -0.65 -26.88 6.48 22.31 0.14 -26.73 15 6 C -0.03 -1.37 5.99 -19.83 -0.12 -1.49 15 7 C -0.11 -4.03 9.33 22.71 0.21 -3.82 15 8 C 0.10 4.89 5.26 -20.70 -0.11 4.78 15 9 C -0.39 -19.68 9.35 23.36 0.22 -19.46 15 10 H 0.10 4.78 7.53 -2.91 -0.02 4.76 15 11 C 0.06 3.21 5.43 85.28 0.46 3.67 15 12 N -0.78 -37.63 13.93 21.84 0.30 -37.33 15 13 Si 0.96 43.03 24.55 68.60 1.68 44.71 15 14 H -0.27 -11.92 6.59 99.48 0.66 -11.27 15 15 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 16 H -0.25 -12.06 6.83 99.48 0.68 -11.38 15 17 C -0.94 -48.64 8.48 67.26 0.57 -48.07 15 18 S 2.56 121.85 5.99 -56.49 -0.34 121.51 15 19 O -1.00 -50.58 18.01 -128.19 -2.31 -52.89 15 20 O -0.99 -50.23 18.01 -128.19 -2.31 -52.53 15 21 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.07 1.23 8.07 -2.39 -0.02 1.21 15 23 H 0.10 1.13 8.08 -2.39 -0.02 1.11 15 24 H 0.18 2.63 8.06 -2.91 -0.02 2.61 15 25 H 0.16 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.14 4.52 7.50 -2.91 -0.02 4.50 15 27 H 0.31 13.31 8.30 -92.71 -0.77 12.54 15 28 H 0.16 8.05 4.61 -2.91 -0.01 8.04 15 Total: -1.00 -66.44 255.26 0.56 -65.88 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.11 Total: 7.39 kcal Atomic # 6 Polarization: -99.14 SS G_CDS: 2.41 Total: -96.73 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.30 Total: -37.33 kcal Atomic # 8 Polarization: -100.80 SS G_CDS: -4.62 Total: -105.42 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.68 Total: 44.71 kcal Atomic # 16 Polarization: 121.85 SS G_CDS: -0.34 Total: 121.51 kcal Total: -66.44 0.56 -65.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260209798.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.203 kcal (2) G-P(sol) polarization free energy of solvation -66.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds