Wall clock time and date at job start Mon Mar 30 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30959 * 125.30205 * 2 1 4 4 C 1.33417 * 109.88223 * 180.02562 * 3 2 1 5 5 Cl 1.73593 * 126.27915 * 179.97438 * 4 3 2 6 6 C 1.38063 * 107.44361 * 359.97438 * 4 3 2 7 7 C 1.40945 * 133.72914 * 180.02562 * 6 4 3 8 8 C 1.35885 * 119.17966 * 180.02562 * 7 6 4 9 9 C 1.50701 * 120.10202 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47396 * 269.97849 * 9 8 7 11 11 H 1.08006 * 119.99685 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00148 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99700 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47022 * 89.99885 * 14 12 10 16 16 H 1.48507 * 109.46825 * 209.99706 * 14 12 10 17 17 H 1.48494 * 109.47226 * 329.99920 * 14 12 10 18 18 C 1.40841 * 119.79087 * 359.97438 * 8 7 6 19 19 C 1.34655 * 120.62863 * 359.97438 * 18 8 7 20 20 N 1.34981 * 125.30335 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47524 * 269.97454 * 1 2 3 22 22 H 1.09001 * 109.47399 * 29.97587 * 1 2 3 23 23 H 1.09008 * 109.46998 * 149.97372 * 1 2 3 24 24 H 1.07993 * 120.40911 * 0.02562 * 7 6 4 25 25 H 1.08996 * 109.47437 * 29.98290 * 9 8 7 26 26 H 1.09001 * 109.46652 * 149.98194 * 9 8 7 27 27 H 0.97000 * 119.99493 * 180.02562 * 13 12 10 28 28 H 1.07996 * 119.68572 * 180.27254 * 18 8 7 29 29 H 1.08000 * 119.72261 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2638 1.0688 0.0000 4 6 3.5499 0.7140 -0.0006 5 17 4.9122 1.7900 -0.0014 6 6 3.5987 -0.6657 -0.0003 7 6 4.6509 -1.6034 -0.0002 8 6 4.3562 -2.9300 -0.0005 9 6 5.4650 -3.9505 0.0001 10 6 5.8353 -4.2911 -1.4204 11 1 5.3196 -3.8156 -2.2416 12 6 6.8324 -5.2095 -1.6717 13 7 7.4608 -5.7881 -0.6716 14 14 7.2918 -5.6310 -3.4326 15 1 8.3622 -4.7130 -3.8982 16 1 7.7796 -7.0323 -3.4950 17 1 6.0989 -5.4828 -4.3044 18 6 3.0113 -3.3480 -0.0004 19 6 2.0123 -2.4451 0.0005 20 7 2.2870 -1.1016 -0.0005 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 5.6787 -1.2718 0.0001 25 1 6.3348 -3.5418 0.5143 26 1 5.1293 -4.8513 0.5140 27 1 8.1625 -6.4340 -0.8485 28 1 2.7790 -4.4026 0.0038 29 1 0.9861 -2.7819 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:47 Heat of formation + Delta-G solvation = 63.306916 kcal Electronic energy + Delta-G solvation = -15303.613421 eV Core-core repulsion = 12639.265671 eV Total energy + Delta-G solvation = -2664.347751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.57038 -37.51406 -36.28432 -33.96872 -32.71543 -31.50005 -29.92629 -28.38655 -25.61712 -23.70514 -22.92800 -20.84393 -20.70219 -17.28747 -16.49985 -16.20394 -15.92294 -15.27396 -14.75510 -14.28858 -13.93995 -13.30182 -13.14604 -12.58211 -12.56204 -12.27699 -11.94057 -11.64913 -11.21112 -11.07680 -10.90610 -10.71518 -10.66693 -10.11814 -10.02848 -9.73596 -9.34795 -8.88761 -8.54413 -6.97991 -6.16089 -4.21946 1.19433 1.54791 2.14820 2.91299 3.05358 3.23962 3.30752 3.33740 3.83787 4.35590 4.53337 4.71802 4.88279 5.17389 5.23136 5.27592 5.42820 5.45858 5.64368 5.70802 6.01686 6.20975 6.42525 6.55952 6.77547 6.99387 7.33288 7.39229 7.55775 7.77915 7.91999 8.13646 8.82629 9.43167 10.92874 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.006009 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.619089 B = 4658.406830 C = 5276.976170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.150 3.850 3 N -0.441 5.441 4 C 0.022 3.978 5 Cl -0.012 7.012 6 C 0.054 3.946 7 C -0.105 4.105 8 C -0.028 4.028 9 C 0.051 3.949 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.100 4.100 19 C 0.024 3.976 20 N -0.357 5.357 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.146 0.854 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.151 0.849 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 7.256 2.227 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 N -0.158 5.158 4 C -0.138 4.138 5 Cl 0.016 6.984 6 C -0.058 4.058 7 C -0.125 4.125 8 C -0.031 4.031 9 C 0.014 3.986 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.121 4.121 19 C -0.095 4.095 20 N -0.029 5.029 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.164 0.836 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.169 0.831 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.475 8.048 2.270 14.199 hybrid contribution 0.814 -0.976 -0.996 1.615 sum -10.662 7.072 1.274 12.858 Atomic orbital electron populations 1.20064 0.84367 1.03823 1.03192 1.22755 0.95277 0.78941 1.13504 1.69452 1.00894 1.28309 1.17172 1.20345 0.88543 0.86536 1.18367 1.98320 1.38265 1.64213 1.97611 1.19149 0.84566 0.93254 1.08834 1.20388 0.97460 0.91035 1.03598 1.20708 0.95562 0.95213 0.91611 1.18372 0.90420 0.91618 0.98171 1.20992 1.19350 1.24138 0.91092 0.92409 1.24992 0.95916 0.95773 0.97398 1.69944 1.24089 1.28107 1.30780 0.86514 0.78910 0.77689 0.84486 1.20434 1.21070 1.19795 1.21076 0.92057 1.00085 0.98897 1.21557 1.01039 0.79812 1.07136 1.42597 1.07408 1.06300 1.46612 0.90519 0.89286 0.90931 0.83639 0.94659 0.94776 0.92640 0.83140 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.33 36.00 0.37 -0.19 15 2 C 0.15 2.31 7.96 -155.09 -1.23 1.07 15 3 N -0.44 -7.88 11.20 -7.31 -0.08 -7.96 15 4 C 0.02 0.41 7.84 -16.93 -0.13 0.28 15 5 Cl -0.01 -0.20 29.32 -51.86 -1.52 -1.72 15 6 C 0.05 1.00 6.80 -84.02 -0.57 0.43 15 7 C -0.11 -2.04 9.75 -39.40 -0.38 -2.42 15 8 C -0.03 -0.55 5.08 -104.48 -0.53 -1.08 15 9 C 0.05 1.21 5.11 -29.04 -0.15 1.06 15 10 C -0.52 -13.63 9.09 -34.44 -0.31 -13.94 15 11 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 13 N -0.89 -25.10 13.29 55.43 0.74 -24.36 15 14 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 18 C -0.10 -1.63 9.66 -39.87 -0.39 -2.02 15 19 C 0.02 0.34 10.81 -16.45 -0.18 0.16 15 20 N -0.36 -5.87 2.95 -58.10 -0.17 -6.04 15 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.07 0.58 8.04 -51.92 -0.42 0.16 15 24 H 0.15 2.78 8.06 -52.49 -0.42 2.35 15 25 H 0.04 0.88 8.08 -51.93 -0.42 0.47 15 26 H 0.03 0.83 8.10 -51.93 -0.42 0.41 15 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.15 2.16 8.06 -52.49 -0.42 1.74 15 29 H 0.16 1.56 7.98 -52.49 -0.42 1.14 15 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -30.13 276.14 -8.41 -38.54 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -2.91 Total: -3.25 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.60 Total: -15.09 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.48 Total: -38.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.13 -8.41 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.849 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds