Wall clock time and date at job start Mon Mar 30 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30959 * 125.30205 * 2 1 4 4 C 1.33417 * 109.88223 * 180.02562 * 3 2 1 5 5 Cl 1.73593 * 126.27915 * 179.97438 * 4 3 2 6 6 C 1.38063 * 107.44361 * 359.97438 * 4 3 2 7 7 C 1.40945 * 133.72914 * 180.02562 * 6 4 3 8 8 C 1.35885 * 119.17966 * 180.02562 * 7 6 4 9 9 C 1.50701 * 120.10202 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47396 * 269.97849 * 9 8 7 11 11 H 1.08006 * 119.99685 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00148 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99700 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47022 * 89.99885 * 14 12 10 16 16 H 1.48507 * 109.46825 * 209.99706 * 14 12 10 17 17 H 1.48494 * 109.47226 * 329.99920 * 14 12 10 18 18 C 1.40841 * 119.79087 * 359.97438 * 8 7 6 19 19 C 1.34655 * 120.62863 * 359.97438 * 18 8 7 20 20 N 1.34981 * 125.30335 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47524 * 269.97454 * 1 2 3 22 22 H 1.09001 * 109.47399 * 29.97587 * 1 2 3 23 23 H 1.09008 * 109.46998 * 149.97372 * 1 2 3 24 24 H 1.07993 * 120.40911 * 0.02562 * 7 6 4 25 25 H 1.08996 * 109.47437 * 29.98290 * 9 8 7 26 26 H 1.09001 * 109.46652 * 149.98194 * 9 8 7 27 27 H 0.97000 * 119.99493 * 180.02562 * 13 12 10 28 28 H 1.07996 * 119.68572 * 180.27254 * 18 8 7 29 29 H 1.08000 * 119.72261 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2638 1.0688 0.0000 4 6 3.5499 0.7140 -0.0006 5 17 4.9122 1.7900 -0.0014 6 6 3.5987 -0.6657 -0.0003 7 6 4.6509 -1.6034 -0.0002 8 6 4.3562 -2.9300 -0.0005 9 6 5.4650 -3.9505 0.0001 10 6 5.8353 -4.2911 -1.4204 11 1 5.3196 -3.8156 -2.2416 12 6 6.8324 -5.2095 -1.6717 13 7 7.4608 -5.7881 -0.6716 14 14 7.2918 -5.6310 -3.4326 15 1 8.3622 -4.7130 -3.8982 16 1 7.7796 -7.0323 -3.4950 17 1 6.0989 -5.4828 -4.3044 18 6 3.0113 -3.3480 -0.0004 19 6 2.0123 -2.4451 0.0005 20 7 2.2870 -1.1016 -0.0005 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 5.6787 -1.2718 0.0001 25 1 6.3348 -3.5418 0.5143 26 1 5.1293 -4.8513 0.5140 27 1 8.1625 -6.4340 -0.8485 28 1 2.7790 -4.4026 0.0038 29 1 0.9861 -2.7819 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:47 Heat of formation + Delta-G solvation = 47.340223 kcal Electronic energy + Delta-G solvation = -15304.305789 eV Core-core repulsion = 12639.265671 eV Total energy + Delta-G solvation = -2665.040118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.85044 -38.88194 -37.61199 -35.62142 -34.35703 -32.81365 -31.15513 -29.96495 -27.07236 -25.32026 -24.35362 -22.22047 -22.04488 -18.54007 -18.53178 -17.59565 -17.20122 -16.74045 -16.38724 -15.71305 -15.19800 -14.53338 -14.47236 -13.91361 -13.69524 -13.55230 -13.45195 -13.25714 -12.86597 -12.56137 -12.40513 -12.35506 -12.19341 -11.69298 -11.67334 -11.31624 -11.01780 -10.61589 -10.22554 -8.38953 -8.14693 -6.34782 -0.12063 0.21810 0.83799 1.40494 1.41894 1.52092 1.69815 1.79687 2.34218 2.51952 3.10129 3.42417 3.65331 3.72833 3.81986 4.02894 4.29305 4.56632 4.70987 4.76156 4.91637 4.99873 5.08783 5.16760 5.22935 5.31700 5.58191 5.71477 5.82665 6.11610 6.19824 6.64261 6.77016 7.34130 8.87082 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.006009 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.619089 B = 4658.406830 C = 5276.976170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.172 3.828 3 N -0.470 5.470 4 C 0.007 3.993 5 Cl -0.008 7.008 6 C 0.030 3.970 7 C -0.120 4.120 8 C -0.041 4.041 9 C 0.059 3.941 10 C -0.529 4.529 11 H 0.054 0.946 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.961 3.039 15 H -0.277 1.277 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.125 4.125 19 C 0.057 3.943 20 N -0.367 5.367 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.131 0.869 25 H 0.006 0.994 26 H 0.021 0.979 27 H 0.266 0.734 28 H 0.169 0.831 29 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 7.298 1.409 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 N -0.187 5.187 4 C -0.152 4.152 5 Cl 0.020 6.980 6 C -0.081 4.081 7 C -0.139 4.139 8 C -0.044 4.044 9 C 0.022 3.978 10 C -0.567 4.567 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.565 5.565 14 Si 0.785 3.215 15 H -0.203 1.203 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.145 4.145 19 C -0.061 4.061 20 N -0.039 5.039 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.121 0.879 24 H 0.148 0.852 25 H 0.024 0.976 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.186 0.814 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.404 8.099 1.453 16.588 hybrid contribution 1.622 -0.886 -0.693 1.973 sum -12.782 7.214 0.760 14.697 Atomic orbital electron populations 1.20414 0.80099 1.05836 1.05247 1.23962 0.97230 0.77887 1.09265 1.69514 1.00726 1.29638 1.18823 1.20600 0.89231 0.86803 1.18522 1.98309 1.38168 1.63981 1.97571 1.19052 0.85566 0.93234 1.10283 1.20209 0.97413 0.91355 1.04968 1.20430 0.96377 0.94258 0.93338 1.18103 0.90970 0.92122 0.96586 1.21298 1.19296 1.23848 0.92223 0.92772 1.25823 0.95913 0.95760 1.01374 1.70055 1.24761 1.28855 1.32856 0.85510 0.78704 0.77519 0.79722 1.20283 1.20419 1.18900 1.21154 0.90701 1.01651 1.00977 1.22314 1.02929 0.78259 1.02647 1.42899 1.06597 1.07479 1.46960 0.88264 0.88317 0.87902 0.85155 0.97568 0.96055 0.92497 0.81382 0.76311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.33 71.24 0.74 -0.11 15 2 C 0.17 4.72 7.96 138.01 1.10 5.82 15 3 N -0.47 -15.95 11.20 -177.03 -1.98 -17.93 15 4 C 0.01 0.26 7.84 84.41 0.66 0.92 15 5 Cl -0.01 -0.28 29.32 -2.72 -0.08 -0.36 15 6 C 0.03 1.12 6.80 38.76 0.26 1.38 15 7 C -0.12 -4.80 9.75 22.39 0.22 -4.59 15 8 C -0.04 -1.65 5.08 -19.77 -0.10 -1.75 15 9 C 0.06 2.93 5.11 29.10 0.15 3.08 15 10 C -0.53 -28.52 9.09 25.60 0.23 -28.29 15 11 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 12 C 0.01 0.56 5.46 84.65 0.46 1.02 15 13 N -0.93 -53.44 13.29 21.45 0.28 -53.16 15 14 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 18 C -0.12 -3.85 9.66 22.09 0.21 -3.64 15 19 C 0.06 1.39 10.81 83.04 0.90 2.29 15 20 N -0.37 -11.04 2.95 -337.74 -1.00 -12.04 15 21 H 0.10 1.12 8.14 -2.39 -0.02 1.10 15 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.10 0.95 8.04 -2.38 -0.02 0.93 15 24 H 0.13 5.38 8.06 -2.91 -0.02 5.36 15 25 H 0.01 0.33 8.08 -2.39 -0.02 0.31 15 26 H 0.02 1.08 8.10 -2.39 -0.02 1.06 15 27 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 28 H 0.17 4.50 8.06 -2.91 -0.02 4.47 15 29 H 0.22 2.74 7.98 -2.91 -0.02 2.72 15 Total: -1.00 -67.40 276.14 5.25 -62.16 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.16 Total: 0.37 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.83 Total: -23.86 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.69 Total: -83.12 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -67.40 5.25 -62.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.498 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds