Wall clock time and date at job start Mon Mar 30 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48501 * 109.47361 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.47264 * 30.00687 * 3 2 1 6 6 H 1.48508 * 109.46860 * 150.00500 * 3 2 1 7 7 C 1.37877 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39422 * 120.20843 * 269.72087 * 11 10 9 13 13 C 1.46796 * 134.32128 * 0.71773 * 12 11 10 14 14 C 1.33990 * 106.18190 * 179.51005 * 13 12 11 15 15 O 1.34438 * 110.15499 * 359.76091 * 14 13 12 16 16 C 1.34853 * 110.89515 * 359.97438 * 15 14 13 17 17 C 1.38922 * 133.40141 * 179.97438 * 16 15 14 18 18 C 1.37810 * 119.97885 * 180.02562 * 17 16 15 19 19 C 1.37827 * 120.20061 * 90.00200 * 11 10 9 20 20 Cl 1.73601 * 119.87827 * 359.97438 * 19 11 10 21 21 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47543 * 59.99886 * 9 7 2 23 23 H 1.09008 * 109.47338 * 300.00399 * 9 7 2 24 24 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 25 25 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 26 26 H 1.08004 * 126.90426 * 359.24713 * 13 12 11 27 27 H 1.08007 * 124.92078 * 179.74181 * 14 13 12 28 28 H 1.08001 * 120.00922 * 359.97438 * 17 16 15 29 29 H 1.08000 * 119.66017 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.1465 -5.5773 1.2053 13 6 1.3373 -5.2347 2.6199 14 6 0.7675 -6.2224 3.3234 15 8 0.2394 -7.1380 2.4926 16 6 0.4390 -6.7908 1.2049 17 6 0.0993 -7.3802 -0.0063 18 6 0.4506 -6.7707 -1.1913 19 6 1.1447 -5.5680 -1.1908 20 17 1.5766 -4.8182 -2.6958 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8719 -3.6043 0.8895 25 1 2.8719 -3.6043 -0.8906 26 1 1.8400 -4.3639 3.0142 27 1 0.7372 -6.2756 4.4018 28 1 -0.4393 -8.3163 -0.0193 29 1 0.1835 -7.2332 -2.1300 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260284242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:28 Heat of formation + Delta-G solvation = 5.608073 kcal Electronic energy + Delta-G solvation = -15422.997561 eV Core-core repulsion = 12723.855049 eV Total energy + Delta-G solvation = -2699.142511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.23504 -38.15953 -35.83019 -34.19978 -32.63423 -31.43074 -29.35006 -28.57769 -25.10353 -22.85773 -22.19263 -21.41239 -19.79170 -17.31842 -16.95821 -16.28990 -15.89869 -15.75157 -14.47613 -14.37597 -13.52282 -13.07932 -12.89694 -12.82123 -12.49011 -12.18547 -11.99599 -11.36298 -11.09763 -10.93468 -10.86369 -10.61534 -10.30273 -9.98062 -9.80149 -9.48242 -9.08329 -8.33572 -8.24772 -7.79420 -5.98489 -4.01345 1.08662 1.41983 2.52686 2.56317 2.95866 3.32686 3.38882 3.41802 3.80350 4.46527 4.66454 4.83706 5.13419 5.30183 5.37278 5.43881 5.45842 5.77595 5.96348 6.10852 6.23448 6.35733 6.52773 6.55723 6.66731 6.78313 7.02301 7.28841 7.68555 7.81712 8.00891 8.40813 9.04960 9.62286 11.12598 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.007004 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.405837 B = 3996.698584 C = 4925.026720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.085 4.085 11 C 0.006 3.994 12 C -0.124 4.124 13 C -0.185 4.185 14 C -0.011 4.011 15 O -0.198 6.198 16 C 0.054 3.946 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.063 4.063 20 Cl -0.060 7.060 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.016 0.984 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.162 0.838 27 H 0.207 0.793 28 H 0.134 0.866 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -14.316 1.963 14.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.122 4.122 11 C 0.005 3.995 12 C -0.125 4.125 13 C -0.204 4.204 14 C -0.075 4.075 15 O -0.100 6.100 16 C 0.007 3.993 17 C -0.137 4.137 18 C -0.098 4.098 19 C -0.090 4.090 20 Cl -0.031 7.031 21 H 0.070 0.930 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.179 0.821 27 H 0.223 0.777 28 H 0.152 0.848 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.084 -14.365 1.905 14.531 hybrid contribution 0.447 1.233 -0.046 1.312 sum 1.531 -13.132 1.860 13.351 Atomic orbital electron populations 1.69975 1.06042 1.26567 1.50689 1.24999 0.94807 0.99144 0.95326 0.86613 0.79834 0.83537 0.78131 1.20653 1.21258 1.19863 1.21196 0.92996 0.90783 1.50767 0.92600 1.19019 0.93472 0.90008 0.97688 1.20957 0.98726 0.90381 1.02133 1.19681 0.94819 0.95986 0.88992 1.19673 1.03194 0.95853 0.93779 1.22596 1.05525 1.01408 0.90826 1.23869 0.98858 0.88973 0.95785 1.83969 1.66297 1.45543 1.14211 1.19656 1.00104 0.95467 0.84091 1.19608 1.05259 1.01623 0.87189 1.20706 0.97541 0.93801 0.97778 1.20517 1.05171 0.95992 0.87343 1.98356 1.91874 1.82102 1.30724 0.93005 0.95960 0.96571 0.91822 0.91014 0.82066 0.77670 0.84767 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.04 0.92 4.95 -27.89 -0.14 0.78 15 10 C -0.08 -1.81 4.84 -27.88 -0.13 -1.94 15 11 C 0.01 0.12 5.16 -104.33 -0.54 -0.42 15 12 C -0.12 -2.22 6.15 -105.16 -0.65 -2.87 15 13 C -0.18 -2.87 10.87 -37.62 -0.41 -3.28 15 14 C -0.01 -0.14 11.96 29.24 0.35 0.21 15 15 O -0.20 -2.93 10.58 3.81 0.04 -2.89 15 16 C 0.05 0.88 7.41 -38.49 -0.29 0.59 15 17 C -0.12 -1.65 10.06 -39.48 -0.40 -2.05 15 18 C -0.08 -1.15 9.79 -39.51 -0.39 -1.53 15 19 C -0.06 -1.11 6.31 -39.50 -0.25 -1.36 15 20 Cl -0.06 -1.03 27.28 -51.86 -1.41 -2.44 15 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.02 0.45 8.14 -51.92 -0.42 0.03 15 24 H 0.06 1.30 7.92 -51.93 -0.41 0.89 15 25 H 0.07 1.51 6.90 -51.93 -0.36 1.15 15 26 H 0.16 2.37 8.06 -52.48 -0.42 1.95 15 27 H 0.21 1.63 8.06 -52.48 -0.42 1.21 15 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 29 H 0.14 1.59 8.06 -52.49 -0.42 1.16 15 LS Contribution 273.48 15.07 4.12 4.12 Total: -1.00 -31.62 273.48 -7.63 -39.25 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -2.85 Total: -3.15 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.25 Total: -25.26 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.41 Total: -2.44 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.62 -7.63 -39.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260284242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.857 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds