Wall clock time and date at job start Mon Mar 30 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35751 * 117.00248 * 2 1 4 4 C 1.38835 * 119.60036 * 179.97438 * 3 2 1 5 5 C 1.38469 * 119.06459 * 180.02562 * 4 3 2 6 6 C 1.39497 * 118.78012 * 359.97321 * 5 4 3 7 7 C 1.39168 * 119.24359 * 0.07407 * 6 5 4 8 8 N 1.32019 * 119.59107 * 0.02562 * 3 2 1 9 9 S 1.76001 * 121.49887 * 179.97438 * 7 6 5 10 10 C 1.75448 * 101.36261 * 18.19651 * 9 7 6 11 11 C 1.37166 * 122.27126 * 341.58278 * 10 9 7 12 12 C 1.40023 * 118.69828 * 180.11048 * 11 10 9 13 13 H 1.07995 * 120.00269 * 20.68925 * 12 11 10 14 14 C 1.39423 * 119.99435 * 200.69458 * 12 11 10 15 15 N 1.31263 * 120.00521 * 10.25673 * 14 12 11 16 16 Si 1.86803 * 119.99555 * 190.25986 * 14 12 11 17 17 H 1.48502 * 109.47061 * 59.99789 * 16 14 12 18 18 H 1.48503 * 109.47013 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47173 * 299.99813 * 16 14 12 20 20 N 1.38362 * 122.59405 * 0.13577 * 11 10 9 21 21 H 1.09002 * 109.47211 * 59.99815 * 1 2 3 22 22 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47141 * 299.99753 * 1 2 3 24 24 H 1.08008 * 120.46482 * 0.03777 * 4 3 2 25 25 H 1.07999 * 120.60232 * 179.97438 * 5 4 3 26 26 H 1.08005 * 118.86312 * 161.56770 * 10 9 7 27 27 H 0.96996 * 120.00527 * 180.02562 * 15 14 12 28 28 H 0.97003 * 118.60989 * 204.11220 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4322 1.2725 0.0005 5 6 4.0493 2.5120 0.0011 6 6 3.2541 3.6581 0.0005 7 6 1.8689 3.5245 0.0009 8 7 1.3184 2.3116 0.0005 9 16 0.8095 4.9300 0.0009 10 6 1.9061 6.1895 -0.5369 11 6 3.2692 6.0466 -0.4811 12 6 4.0746 7.1011 -0.9284 13 1 3.6705 8.1007 -0.9900 14 6 5.3982 6.8604 -1.2943 15 7 5.8324 5.6274 -1.4138 16 14 6.5539 8.2927 -1.6145 17 1 6.6658 9.1222 -0.3878 18 1 7.8951 7.7735 -1.9845 19 1 6.0196 9.1211 -2.7251 20 7 3.8796 4.9016 -0.0008 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 4.0214 0.3673 0.0003 25 1 5.1265 2.5899 0.0019 26 1 1.4937 7.1089 -0.9255 27 1 6.7534 5.4600 -1.6680 28 1 4.7831 4.9675 0.3461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290833.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:08 Heat of formation + Delta-G solvation = 12.478757 kcal Electronic energy + Delta-G solvation = -15630.474616 eV Core-core repulsion = 12965.966497 eV Total energy + Delta-G solvation = -2664.508119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93207 -37.91927 -36.18166 -33.20837 -31.74991 -30.28119 -27.96660 -26.66451 -25.65970 -23.08887 -22.24900 -19.66377 -18.12917 -17.87907 -16.66774 -16.31301 -15.53157 -15.20788 -14.88308 -14.34681 -13.76097 -13.45399 -12.97891 -12.82443 -12.50533 -11.75127 -11.69075 -11.48834 -11.44741 -11.05282 -10.89467 -10.55686 -10.32318 -9.77318 -9.70827 -9.33559 -8.77690 -8.14756 -7.84126 -7.11976 -5.69188 -4.59897 1.62783 1.96839 2.61323 2.78957 2.91311 2.94258 3.52324 3.60825 3.69009 4.05038 4.29750 4.59219 4.95971 5.23282 5.50900 5.54646 5.62847 5.74693 5.80310 5.94033 6.30753 6.54827 6.78593 6.87660 7.28296 7.42854 7.70623 7.80857 8.01304 8.37059 8.40754 8.91114 8.96673 9.85599 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036398 B = 0.006808 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.093501 B = 4111.822536 C = 4793.636344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.317 6.317 3 C 0.270 3.730 4 C -0.165 4.165 5 C -0.100 4.100 6 C 0.138 3.862 7 C 0.100 3.900 8 N -0.506 5.506 9 S 0.007 5.993 10 C -0.492 4.492 11 C 0.347 3.653 12 C -0.459 4.459 13 H 0.095 0.905 14 C 0.073 3.927 15 N -0.811 5.811 16 Si 0.925 3.075 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.262 1.262 20 N -0.640 5.640 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.127 0.873 27 H 0.286 0.714 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -5.233 2.176 5.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.190 4.190 5 C -0.132 4.132 6 C 0.029 3.971 7 C -0.150 4.150 8 N -0.233 5.233 9 S 0.251 5.749 10 C -0.629 4.629 11 C 0.242 3.758 12 C -0.493 4.493 13 H 0.113 0.887 14 C -0.145 4.145 15 N -0.437 5.437 16 Si 0.749 3.251 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.187 1.187 20 N -0.261 5.261 21 H 0.073 0.927 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.151 0.849 25 H 0.157 0.843 26 H 0.145 0.855 27 H 0.097 0.903 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.381 -5.447 2.343 6.390 hybrid contribution 3.060 0.609 -0.683 3.194 sum 0.679 -4.838 1.661 5.160 Atomic orbital electron populations 1.22690 0.78383 1.01794 1.02274 1.86158 1.21980 1.24881 1.89480 1.19431 0.89169 0.84191 0.98486 1.20668 0.91629 0.98288 1.08401 1.21014 0.99913 0.89960 1.02323 1.18387 0.91695 0.87704 0.99332 1.23018 0.92678 0.96000 1.03258 1.67241 1.39603 0.96988 1.19453 1.82908 1.16494 0.94039 1.81430 1.23524 0.93118 1.04352 1.41925 1.16605 0.90227 0.83186 0.85751 1.19284 0.95049 0.96390 1.38569 0.88668 1.26092 0.98984 0.97411 0.92003 1.69839 1.18142 1.20477 1.35290 0.86070 0.78246 0.80738 0.80075 1.18600 1.20205 1.18687 1.41864 1.18443 1.03077 1.62764 0.92721 0.89503 0.92774 0.84857 0.84293 0.85531 0.90290 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 101.05 1.05 1.68 15 2 O -0.32 -5.52 10.48 -18.96 -0.20 -5.72 15 3 C 0.27 5.35 7.49 -17.25 -0.13 5.22 15 4 C -0.17 -3.02 10.04 -39.28 -0.39 -3.41 15 5 C -0.10 -1.96 9.94 -39.03 -0.39 -2.35 15 6 C 0.14 3.16 6.53 -83.70 -0.55 2.61 15 7 C 0.10 2.35 6.97 -16.61 -0.12 2.23 15 8 N -0.51 -11.06 9.12 -12.09 -0.11 -11.17 15 9 S 0.01 0.17 22.55 -107.50 -2.42 -2.26 15 10 C -0.49 -12.42 10.11 30.34 0.31 -12.12 15 11 C 0.35 8.84 6.28 -84.64 -0.53 8.31 15 12 C -0.46 -11.31 8.90 -38.47 -0.34 -11.65 15 13 H 0.10 2.26 7.86 -52.49 -0.41 1.85 15 14 C 0.07 1.66 5.25 -17.35 -0.09 1.57 15 15 N -0.81 -18.69 11.03 55.52 0.61 -18.08 15 16 Si 0.92 17.21 29.57 -169.99 -5.03 12.18 15 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 18 H -0.28 -5.05 7.11 56.52 0.40 -4.65 15 19 H -0.26 -4.94 7.11 56.52 0.40 -4.53 15 20 N -0.64 -15.21 4.17 -8.81 -0.04 -15.25 15 21 H 0.05 0.81 8.10 -51.93 -0.42 0.38 15 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 0.78 8.10 -51.93 -0.42 0.36 15 24 H 0.13 2.00 8.06 -52.48 -0.42 1.58 15 25 H 0.14 2.43 8.06 -52.49 -0.42 2.01 15 26 H 0.13 3.14 8.02 -52.48 -0.42 2.72 15 27 H 0.29 6.04 8.31 -40.82 -0.34 5.70 15 28 H 0.41 9.38 6.96 -40.82 -0.28 9.10 15 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -26.87 261.75 -6.79 -33.66 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -2.36 Total: 10.60 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.18 Total: -7.91 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.47 Total: -44.49 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.20 Total: -5.72 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.42 Total: -2.26 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.87 -6.79 -33.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290833.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.136 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds