Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30243 * 126.10415 * 2 1 4 4 N 1.39872 * 110.08541 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.46667 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47319 * 270.02646 * 5 4 3 7 7 H 1.07997 * 119.99836 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47258 * 89.99596 * 10 8 6 12 12 H 1.48502 * 109.46922 * 209.99756 * 10 8 6 13 13 H 1.48496 * 109.47038 * 329.99541 * 10 8 6 14 14 C 1.37082 * 109.07074 * 359.97438 * 4 3 2 15 15 C 1.39277 * 133.82981 * 179.97438 * 14 4 3 16 16 C 1.36585 * 119.86715 * 180.02562 * 15 14 4 17 17 C 1.39061 * 120.80404 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.70222 * 179.97438 * 17 16 15 19 19 C 1.36565 * 120.59870 * 359.97438 * 17 16 15 20 20 C 1.39950 * 119.62637 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.46968 * 89.97643 * 1 2 3 22 22 H 1.09003 * 109.47101 * 209.97915 * 1 2 3 23 23 H 1.08996 * 109.46965 * 329.97836 * 1 2 3 24 24 H 1.08998 * 109.47108 * 30.02451 * 5 4 3 25 25 H 1.08997 * 109.47361 * 150.02330 * 5 4 3 26 26 H 0.97001 * 119.99849 * 180.02562 * 9 8 6 27 27 H 1.07998 * 120.06931 * 0.04740 * 15 14 4 28 28 H 1.08003 * 119.60144 * 179.97438 * 16 15 14 29 29 H 1.08008 * 120.18343 * 179.72960 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 -0.0006 5 6 4.7652 1.5786 -0.0013 6 6 5.1572 1.8917 -1.4224 7 1 4.6077 1.4545 -2.2429 8 6 6.2180 2.7354 -1.6749 9 7 6.8874 3.2674 -0.6757 10 14 6.7034 3.1241 -3.4364 11 1 5.9607 4.3230 -3.9015 12 1 8.1629 3.3903 -3.5003 13 1 6.3725 1.9680 -4.3076 14 6 3.6919 -0.7026 -0.0004 15 6 4.7466 -1.6122 -0.0012 16 6 4.4881 -2.9534 -0.0012 17 6 3.1804 -3.4266 -0.0010 18 17 2.8847 -5.1372 -0.0017 19 6 2.1268 -2.5578 -0.0002 20 6 2.3670 -1.1790 -0.0002 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.4957 2.5011 0.5129 25 1 5.6041 1.1084 0.5118 26 1 7.6335 3.8613 -0.8534 27 1 5.7668 -1.2579 -0.0014 28 1 5.3092 -3.6550 -0.0023 29 1 1.1139 -2.9326 -0.0044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = 65.005271 kcal Electronic energy + Delta-G solvation = -15364.882640 eV Core-core repulsion = 12700.608536 eV Total energy + Delta-G solvation = -2664.274104 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.78123 -37.29810 -35.75819 -34.13878 -32.53735 -30.09051 -29.33747 -28.99298 -25.98287 -23.14392 -22.64403 -21.21570 -19.28482 -16.82724 -16.73841 -16.20616 -15.36122 -14.67436 -14.58598 -13.80623 -13.76389 -13.00709 -12.90027 -12.83185 -12.42393 -12.19886 -12.01955 -11.59308 -11.20802 -11.04146 -10.89033 -10.69724 -10.65323 -10.30887 -10.07822 -9.92891 -9.22234 -8.69590 -8.28379 -7.25663 -6.29924 -4.39046 1.27079 1.73051 2.38760 2.96000 3.18425 3.20441 3.24973 3.32061 4.01271 4.25389 4.82825 4.88596 5.02627 5.12075 5.28801 5.62700 5.72856 5.76292 5.80832 5.90387 6.08904 6.18277 6.47148 6.57754 6.74884 6.90725 6.98317 7.13802 7.58306 7.80280 7.83179 8.34196 8.66724 9.27816 10.76502 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.006212 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.753680 B = 4506.265483 C = 5207.895993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.064 3.936 3 N -0.238 5.238 4 N -0.356 5.356 5 C 0.262 3.738 6 C -0.540 4.540 7 H 0.064 0.936 8 C 0.067 3.933 9 N -0.891 5.891 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.139 3.861 15 C -0.109 4.109 16 C -0.078 4.078 17 C -0.084 4.084 18 Cl -0.090 7.090 19 C -0.032 4.032 20 C -0.182 4.182 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.269 0.731 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 -11.444 2.092 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.111 4.111 3 N -0.054 5.054 4 N -0.141 5.141 5 C 0.145 3.855 6 C -0.579 4.579 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.018 3.982 15 C -0.131 4.131 16 C -0.100 4.100 17 C -0.112 4.112 18 Cl -0.061 7.061 19 C -0.053 4.053 20 C -0.191 4.191 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.525 -9.996 2.149 12.695 hybrid contribution 0.523 -0.609 -0.978 1.266 sum -7.001 -10.606 1.170 12.762 Atomic orbital electron populations 1.20104 0.86399 1.03071 1.02835 1.23330 0.96327 0.88578 1.02864 1.76563 0.88481 1.23594 1.16757 1.49327 1.04306 1.02865 1.57568 1.19687 0.78690 0.88187 0.98927 1.21339 1.15519 1.29627 0.91374 0.91817 1.24929 0.95546 0.95026 0.98210 1.69917 1.20757 1.31091 1.31082 0.86348 0.77707 0.78991 0.83625 1.20262 1.20793 1.19637 1.18946 0.94926 0.85888 0.98404 1.19871 0.98202 0.90868 1.04199 1.20423 0.94935 0.94880 0.99734 1.20072 0.94574 0.83643 1.12932 1.98318 1.96425 1.13841 1.97559 1.19977 0.98120 0.90147 0.97070 1.19611 0.92302 0.93252 1.13923 0.90609 0.90702 0.90721 0.92841 0.93018 0.92175 0.84529 0.84989 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.48 36.01 0.38 -0.44 15 2 C 0.06 1.16 7.43 -80.19 -0.60 0.56 15 3 N -0.24 -5.21 12.40 34.84 0.43 -4.78 15 4 N -0.36 -8.24 3.63 -59.88 -0.22 -8.46 15 5 C 0.26 6.67 6.12 -5.19 -0.03 6.64 15 6 C -0.54 -14.80 9.39 -34.44 -0.32 -15.13 15 7 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 8 C 0.07 1.80 5.46 -17.82 -0.10 1.71 15 9 N -0.89 -24.89 13.29 55.43 0.74 -24.15 15 10 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 15 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 14 C 0.14 2.84 6.87 -84.16 -0.58 2.26 15 15 C -0.11 -1.96 9.96 -39.79 -0.40 -2.36 15 16 C -0.08 -1.19 9.74 -39.87 -0.39 -1.58 15 17 C -0.08 -1.24 6.28 -39.88 -0.25 -1.49 15 18 Cl -0.09 -1.14 28.93 -51.86 -1.50 -2.64 15 19 C -0.03 -0.48 9.82 -39.54 -0.39 -0.87 15 20 C -0.18 -3.31 6.33 -105.21 -0.67 -3.97 15 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.05 1.44 8.14 -51.93 -0.42 1.01 15 25 H 0.05 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 27 H 0.14 2.39 8.06 -52.49 -0.42 1.97 15 28 H 0.13 1.66 8.06 -52.48 -0.42 1.24 15 29 H 0.13 1.59 8.06 -52.48 -0.42 1.17 15 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -29.13 277.98 -7.65 -36.78 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -2.93 Total: -2.24 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.34 Total: -14.67 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.95 Total: -37.40 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.13 -7.65 -36.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.781 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds