Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30243 * 126.10415 * 2 1 4 4 N 1.39872 * 110.08541 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.46667 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47319 * 270.02646 * 5 4 3 7 7 H 1.07997 * 119.99836 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47258 * 89.99596 * 10 8 6 12 12 H 1.48502 * 109.46922 * 209.99756 * 10 8 6 13 13 H 1.48496 * 109.47038 * 329.99541 * 10 8 6 14 14 C 1.37082 * 109.07074 * 359.97438 * 4 3 2 15 15 C 1.39277 * 133.82981 * 179.97438 * 14 4 3 16 16 C 1.36585 * 119.86715 * 180.02562 * 15 14 4 17 17 C 1.39061 * 120.80404 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.70222 * 179.97438 * 17 16 15 19 19 C 1.36565 * 120.59870 * 359.97438 * 17 16 15 20 20 C 1.39950 * 119.62637 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.46968 * 89.97643 * 1 2 3 22 22 H 1.09003 * 109.47101 * 209.97915 * 1 2 3 23 23 H 1.08996 * 109.46965 * 329.97836 * 1 2 3 24 24 H 1.08998 * 109.47108 * 30.02451 * 5 4 3 25 25 H 1.08997 * 109.47361 * 150.02330 * 5 4 3 26 26 H 0.97001 * 119.99849 * 180.02562 * 9 8 6 27 27 H 1.07998 * 120.06931 * 0.04740 * 15 14 4 28 28 H 1.08003 * 119.60144 * 179.97438 * 16 15 14 29 29 H 1.08008 * 120.18343 * 179.72960 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6189 0.6663 -0.0006 5 6 4.7652 1.5786 -0.0013 6 6 5.1572 1.8917 -1.4224 7 1 4.6077 1.4545 -2.2429 8 6 6.2180 2.7354 -1.6749 9 7 6.8874 3.2674 -0.6757 10 14 6.7034 3.1241 -3.4364 11 1 5.9607 4.3230 -3.9015 12 1 8.1629 3.3903 -3.5003 13 1 6.3725 1.9680 -4.3076 14 6 3.6919 -0.7026 -0.0004 15 6 4.7466 -1.6122 -0.0012 16 6 4.4881 -2.9534 -0.0012 17 6 3.1804 -3.4266 -0.0010 18 17 2.8847 -5.1372 -0.0017 19 6 2.1268 -2.5578 -0.0002 20 6 2.3670 -1.1790 -0.0002 21 1 -0.3633 0.0004 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 4.4957 2.5011 0.5129 25 1 5.6041 1.1084 0.5118 26 1 7.6335 3.8613 -0.8534 27 1 5.7668 -1.2579 -0.0014 28 1 5.3092 -3.6550 -0.0023 29 1 1.1139 -2.9326 -0.0044 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = 48.678789 kcal Electronic energy + Delta-G solvation = -15365.590609 eV Core-core repulsion = 12700.608536 eV Total energy + Delta-G solvation = -2664.982074 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21769 -38.58373 -36.94921 -35.93260 -34.29209 -31.44951 -30.87371 -30.36312 -27.69409 -24.88491 -24.02725 -22.67563 -20.69648 -18.86390 -18.13614 -17.78574 -16.64824 -16.48148 -16.09994 -15.23903 -15.13253 -14.56067 -14.25183 -14.08869 -13.76218 -13.62184 -13.44553 -13.11472 -12.92216 -12.71811 -12.41392 -12.20728 -12.01290 -11.93476 -11.71787 -11.46491 -10.78541 -10.71167 -9.68560 -8.77268 -8.32626 -6.55836 -0.04776 0.39075 1.19693 1.34009 1.34875 1.45523 1.55928 1.68610 2.30272 2.68160 2.91854 3.47842 3.62682 3.80646 4.07812 4.30645 4.44352 4.55938 4.72922 4.81576 4.83769 4.85669 5.03081 5.07525 5.25121 5.32817 5.47446 5.59948 5.76396 5.77510 6.11253 6.54580 6.85047 7.15520 8.68840 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.006212 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.753680 B = 4506.265483 C = 5207.895993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.082 3.918 3 N -0.293 5.293 4 N -0.391 5.391 5 C 0.282 3.718 6 C -0.557 4.557 7 H 0.048 0.952 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.973 3.027 11 H -0.272 1.272 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.110 3.890 15 C -0.138 4.138 16 C -0.058 4.058 17 C -0.085 4.085 18 Cl -0.061 7.061 19 C -0.019 4.019 20 C -0.194 4.194 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.274 0.726 27 H 0.127 0.873 28 H 0.161 0.839 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -13.795 1.267 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.094 4.094 3 N -0.108 5.108 4 N -0.175 5.175 5 C 0.163 3.837 6 C -0.595 4.595 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.796 3.204 11 H -0.197 1.197 12 H -0.194 1.194 13 H -0.195 1.195 14 C -0.008 4.008 15 C -0.160 4.160 16 C -0.079 4.079 17 C -0.114 4.114 18 Cl -0.032 7.032 19 C -0.040 4.040 20 C -0.203 4.203 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.099 0.901 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.901 -12.373 1.335 15.300 hybrid contribution 0.848 -0.098 -0.669 1.084 sum -8.053 -12.471 0.666 14.860 Atomic orbital electron populations 1.20393 0.82262 1.05097 1.04575 1.24317 0.98494 0.87615 0.98949 1.76493 0.88315 1.25816 1.20138 1.48951 1.04206 1.03524 1.60857 1.19092 0.79604 0.87534 0.97516 1.21476 1.15952 1.30199 0.91848 0.93412 1.25778 0.95215 0.94514 1.02447 1.70007 1.21127 1.31408 1.33110 0.85334 0.77934 0.78692 0.78416 1.19714 1.19377 1.19486 1.19469 0.97045 0.85115 0.99169 1.19966 0.97479 0.91931 1.06650 1.20734 0.96389 0.93978 0.96802 1.20208 0.94241 0.85261 1.11647 1.98336 1.96274 1.11245 1.97383 1.20317 1.00074 0.88573 0.95016 1.19904 0.91196 0.94679 1.14504 0.88763 0.87314 0.90069 0.95813 0.94283 0.91668 0.85502 0.82154 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.48 71.24 0.75 -0.69 15 2 C 0.08 2.92 7.43 44.79 0.33 3.25 15 3 N -0.29 -13.30 12.40 -43.69 -0.54 -13.84 15 4 N -0.39 -19.11 3.63 -343.35 -1.25 -20.35 15 5 C 0.28 15.38 6.12 85.63 0.52 15.91 15 6 C -0.56 -32.03 9.39 25.60 0.24 -31.79 15 7 H 0.05 2.83 7.81 -2.91 -0.02 2.81 15 8 C 0.02 1.20 5.46 84.65 0.46 1.66 15 9 N -0.92 -52.87 13.29 21.45 0.28 -52.58 15 10 Si 0.97 43.68 29.54 68.60 2.03 45.70 15 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 14 C 0.11 4.65 6.87 39.20 0.27 4.92 15 15 C -0.14 -5.05 9.96 22.13 0.22 -4.83 15 16 C -0.06 -1.65 9.74 22.08 0.21 -1.44 15 17 C -0.09 -2.25 6.28 22.08 0.14 -2.12 15 18 Cl -0.06 -1.31 28.93 -2.72 -0.08 -1.39 15 19 C -0.02 -0.52 9.82 22.29 0.22 -0.30 15 20 C -0.19 -6.85 6.33 -20.25 -0.13 -6.98 15 21 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.11 1.67 8.14 -2.39 -0.02 1.66 15 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.02 1.39 8.14 -2.39 -0.02 1.38 15 25 H 0.04 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 27 H 0.13 4.73 8.06 -2.91 -0.02 4.71 15 28 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 29 H 0.17 3.23 8.06 -2.91 -0.02 3.20 15 Total: -1.00 -66.08 277.98 4.84 -61.23 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.16 Total: 3.63 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.24 Total: -22.40 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.50 Total: -86.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -66.08 4.84 -61.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.912 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds