Wall clock time and date at job start Mon Mar 30 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47127 * 269.99621 * 3 2 1 5 5 H 1.48504 * 109.47305 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99870 * 3 2 1 7 7 C 1.37881 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.33991 * 126.90944 * 264.99521 * 11 10 9 13 13 O 1.34437 * 110.15912 * 179.97438 * 12 11 10 14 14 C 1.34857 * 110.88801 * 359.97438 * 13 12 11 15 15 C 1.40470 * 107.26392 * 0.02562 * 14 13 12 16 16 C 1.39415 * 120.15908 * 179.76075 * 15 14 13 17 17 C 1.37751 * 119.62503 * 0.47397 * 16 15 14 18 18 C 1.38720 * 120.28770 * 359.52294 * 17 16 15 19 19 C 1.37966 * 120.67025 * 0.24258 * 18 17 16 20 20 Cl 1.73602 * 120.02733 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99532 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47470 * 59.99490 * 9 7 2 23 23 H 1.09005 * 109.46801 * 300.00080 * 9 7 2 24 24 H 1.09001 * 109.47595 * 59.99192 * 10 9 7 25 25 H 1.09005 * 109.46967 * 299.99604 * 10 9 7 26 26 H 1.08005 * 124.91714 * 359.97438 * 12 11 10 27 27 H 1.08007 * 120.18673 * 180.25101 * 16 15 14 28 28 H 1.08005 * 119.86043 * 179.74309 * 17 16 15 29 29 H 1.07991 * 119.66576 * 180.21892 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6367 0.0010 11 6 5.5284 -2.6369 0.0009 12 6 6.3330 -2.7303 -1.0664 13 8 7.6203 -2.6961 -0.6805 14 6 7.7177 -2.5779 0.6594 15 6 6.4099 -2.5336 1.1701 16 6 6.1977 -2.4178 2.5431 17 6 7.2775 -2.3371 3.3946 18 6 8.5697 -2.3807 2.8919 19 6 8.7936 -2.5001 1.5358 20 17 10.4176 -2.5537 0.9248 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6802 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.6582 -3.1505 -0.8892 25 1 3.6576 -3.1507 0.8908 26 1 5.9961 -2.8201 -2.0886 27 1 5.1923 -2.3878 2.9366 28 1 7.1174 -2.2431 4.4586 29 1 9.4089 -2.3202 3.5688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260358147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:20 Heat of formation + Delta-G solvation = 6.529365 kcal Electronic energy + Delta-G solvation = -15223.838191 eV Core-core repulsion = 12524.735630 eV Total energy + Delta-G solvation = -2699.102561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.34131 -38.00188 -36.49316 -34.82386 -32.60424 -30.66626 -30.18898 -29.03691 -25.40099 -23.29073 -22.42553 -21.22588 -19.61028 -17.31794 -17.21735 -16.47606 -16.04053 -15.87065 -14.67519 -14.26861 -14.09718 -13.61077 -13.01264 -12.85031 -12.67538 -12.28594 -12.06168 -11.72512 -11.47931 -11.30168 -11.10438 -10.88294 -10.44822 -9.98487 -9.79724 -9.39680 -9.24827 -8.64073 -8.57769 -7.92357 -6.08791 -4.07507 0.80675 1.26105 1.99912 2.49753 2.83101 3.28370 3.36322 3.41074 3.60784 4.41961 4.54918 4.70729 4.91363 5.14078 5.22343 5.25658 5.44980 5.53571 5.70067 5.95580 6.19847 6.28616 6.30729 6.40472 6.49058 6.56921 6.82643 7.17634 7.22695 7.37189 7.73418 8.47660 8.95479 9.53704 11.04393 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.005330 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.391640 B = 5252.337649 C = 5397.623663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.040 4.040 11 C -0.148 4.148 12 C -0.011 4.011 13 O -0.189 6.189 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.055 4.055 17 C -0.134 4.134 18 C -0.089 4.089 19 C -0.030 4.030 20 Cl -0.069 7.069 21 H 0.263 0.737 22 H 0.017 0.983 23 H 0.012 0.988 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.210 0.790 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.643 -5.485 4.010 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.077 4.077 11 C -0.149 4.149 12 C -0.075 4.075 13 O -0.090 6.090 14 C 0.008 3.992 15 C -0.110 4.110 16 C -0.073 4.073 17 C -0.152 4.152 18 C -0.107 4.107 19 C -0.057 4.057 20 Cl -0.040 7.040 21 H 0.073 0.927 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.227 0.773 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.857 -5.387 3.777 19.030 hybrid contribution 0.348 1.003 -0.112 1.067 sum 18.205 -4.384 3.665 19.081 Atomic orbital electron populations 1.69912 1.06275 1.26945 1.50945 1.25003 0.94702 0.99126 0.94469 0.86814 0.80423 0.83691 0.78622 1.20248 1.21316 1.18984 1.21120 0.89271 0.94556 1.51143 0.90859 1.19551 0.96920 0.91310 0.96592 1.20073 0.84821 1.00500 1.02341 1.21708 0.98109 1.04919 0.90145 1.23846 0.78991 1.04559 1.00109 1.84035 1.28843 1.75954 1.20162 1.19152 0.94071 1.03481 0.82546 1.19899 0.91581 1.04742 0.94818 1.20812 1.00198 0.95562 0.90719 1.20955 0.91105 1.02889 1.00259 1.20800 0.98346 1.00044 0.91544 1.19611 0.83228 1.11035 0.91843 1.98359 1.20484 1.97096 1.88093 0.92680 0.96492 0.96969 0.91170 0.91285 0.77318 0.84337 0.84446 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 15 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 15 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 15 9 C -0.01 -0.15 4.02 -27.89 -0.11 -0.26 15 10 C -0.04 -0.76 5.70 -27.89 -0.16 -0.92 15 11 C -0.15 -2.52 5.61 -102.66 -0.58 -3.10 15 12 C -0.01 -0.17 11.89 29.24 0.35 0.18 15 13 O -0.19 -3.01 10.58 3.80 0.04 -2.97 15 14 C 0.06 0.90 7.20 -38.47 -0.28 0.62 15 15 C -0.11 -1.80 6.38 -105.16 -0.67 -2.47 15 16 C -0.05 -0.79 10.10 -39.32 -0.40 -1.18 15 17 C -0.13 -1.56 10.03 -39.58 -0.40 -1.96 15 18 C -0.09 -1.03 9.79 -39.50 -0.39 -1.41 15 19 C -0.03 -0.42 6.33 -39.41 -0.25 -0.67 15 20 Cl -0.07 -0.86 28.96 -51.86 -1.50 -2.36 15 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 22 H 0.02 0.40 7.20 -51.93 -0.37 0.03 15 23 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 15 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 26 H 0.21 2.40 8.06 -52.48 -0.42 1.98 15 27 H 0.14 1.89 8.06 -52.48 -0.42 1.47 15 28 H 0.14 1.18 8.06 -52.48 -0.42 0.75 15 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 15 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -31.05 273.49 -7.43 -38.48 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -2.89 Total: -3.39 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.31 Total: -24.17 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.05 -7.43 -38.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.008 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds