Wall clock time and date at job start Mon Mar 30 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47127 * 269.99621 * 3 2 1 5 5 H 1.48504 * 109.47305 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99870 * 3 2 1 7 7 C 1.37881 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00377 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.33991 * 126.90944 * 264.99521 * 11 10 9 13 13 O 1.34437 * 110.15912 * 179.97438 * 12 11 10 14 14 C 1.34857 * 110.88801 * 359.97438 * 13 12 11 15 15 C 1.40470 * 107.26392 * 0.02562 * 14 13 12 16 16 C 1.39415 * 120.15908 * 179.76075 * 15 14 13 17 17 C 1.37751 * 119.62503 * 0.47397 * 16 15 14 18 18 C 1.38720 * 120.28770 * 359.52294 * 17 16 15 19 19 C 1.37966 * 120.67025 * 0.24258 * 18 17 16 20 20 Cl 1.73602 * 120.02733 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99532 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47470 * 59.99490 * 9 7 2 23 23 H 1.09005 * 109.46801 * 300.00080 * 9 7 2 24 24 H 1.09001 * 109.47595 * 59.99192 * 10 9 7 25 25 H 1.09005 * 109.46967 * 299.99604 * 10 9 7 26 26 H 1.08005 * 124.91714 * 359.97438 * 12 11 10 27 27 H 1.08007 * 120.18673 * 180.25101 * 16 15 14 28 28 H 1.08005 * 119.86043 * 179.74309 * 17 16 15 29 29 H 1.07991 * 119.66576 * 180.21892 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6367 0.0010 11 6 5.5284 -2.6369 0.0009 12 6 6.3330 -2.7303 -1.0664 13 8 7.6203 -2.6961 -0.6805 14 6 7.7177 -2.5779 0.6594 15 6 6.4099 -2.5336 1.1701 16 6 6.1977 -2.4178 2.5431 17 6 7.2775 -2.3371 3.3946 18 6 8.5697 -2.3807 2.8919 19 6 8.7936 -2.5001 1.5358 20 17 10.4176 -2.5537 0.9248 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6802 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.6582 -3.1505 -0.8892 25 1 3.6576 -3.1507 0.8908 26 1 5.9961 -2.8201 -2.0886 27 1 5.1923 -2.3878 2.9366 28 1 7.1174 -2.2431 4.4586 29 1 9.4089 -2.3202 3.5688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:20 Heat of formation + Delta-G solvation = -10.641353 kcal Electronic energy + Delta-G solvation = -15224.582769 eV Core-core repulsion = 12524.735630 eV Total energy + Delta-G solvation = -2699.847139 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.48206 -39.02071 -37.49965 -36.42222 -34.50294 -32.16569 -31.25652 -30.32152 -27.18207 -24.36510 -23.48188 -23.01025 -20.92861 -19.04714 -18.37928 -17.93946 -17.22598 -16.86350 -16.32571 -15.77429 -15.13412 -15.08969 -14.81371 -14.13548 -14.01933 -13.70359 -13.42215 -13.15629 -12.81521 -12.60797 -12.33829 -12.16491 -12.00194 -11.84406 -11.59842 -11.34953 -10.77391 -10.64391 -9.69705 -9.06975 -8.30138 -6.33718 -0.24187 0.21605 0.99321 1.30957 1.34039 1.36169 1.47818 1.74426 2.34620 2.55652 3.05456 3.47652 3.59619 3.91755 4.14120 4.20995 4.32042 4.39309 4.60417 4.71905 4.78831 4.95011 5.01482 5.18355 5.29673 5.37439 5.45311 5.53622 5.61568 5.65607 6.05335 6.27115 6.74201 7.31162 8.86344 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032918 B = 0.005330 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.391640 B = 5252.337649 C = 5397.623663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.530 4.530 8 H 0.039 0.961 9 C 0.000 4.000 10 C -0.026 4.026 11 C -0.181 4.181 12 C 0.006 3.994 13 O -0.195 6.195 14 C 0.033 3.967 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.117 4.117 18 C -0.079 4.079 19 C -0.040 4.040 20 Cl -0.060 7.060 21 H 0.266 0.734 22 H 0.012 0.988 23 H 0.016 0.984 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.241 0.759 27 H 0.137 0.863 28 H 0.174 0.826 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.152 -4.844 4.757 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.038 4.038 10 C -0.064 4.064 11 C -0.182 4.182 12 C -0.058 4.058 13 O -0.097 6.097 14 C -0.015 4.015 15 C -0.133 4.133 16 C -0.097 4.097 17 C -0.135 4.135 18 C -0.097 4.097 19 C -0.068 4.068 20 Cl -0.031 7.031 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.257 0.743 27 H 0.154 0.846 28 H 0.191 0.809 29 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 20.386 -4.761 4.527 21.418 hybrid contribution -0.406 0.713 -0.292 0.872 sum 19.979 -4.047 4.234 20.820 Atomic orbital electron populations 1.70056 1.08115 1.28099 1.52645 1.25915 0.95510 1.03163 0.94239 0.85739 0.79326 0.78877 0.79202 1.19158 1.20829 1.17777 1.21468 0.91773 0.93302 1.50221 0.94268 1.19441 0.93742 0.94281 0.96287 1.19757 0.86643 0.97651 1.02336 1.21504 0.96928 1.08107 0.91666 1.24397 0.78516 1.01917 1.00964 1.84031 1.29031 1.76055 1.20568 1.19461 0.94617 1.04871 0.82563 1.20111 0.91809 1.05789 0.95599 1.21027 1.01217 0.96920 0.90487 1.21382 0.90258 1.00210 1.01656 1.21273 0.99459 0.97899 0.91093 1.19916 0.83338 1.11034 0.92466 1.98360 1.19519 1.97056 1.88176 0.92472 0.96949 0.96558 0.90671 0.91956 0.74254 0.84553 0.80864 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 15 2 C 0.01 0.51 5.47 84.65 0.46 0.97 15 3 Si 0.94 44.50 27.47 68.60 1.88 46.39 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 15 6 H -0.25 -11.40 6.54 99.48 0.65 -10.74 15 7 C -0.53 -30.07 9.66 25.60 0.25 -29.83 15 8 H 0.04 2.42 7.99 -2.91 -0.02 2.39 15 9 C 0.00 0.00 4.02 29.84 0.12 0.12 15 10 C -0.03 -1.01 5.70 29.85 0.17 -0.84 15 11 C -0.18 -6.08 5.61 -18.59 -0.10 -6.19 15 12 C 0.01 0.17 11.89 66.85 0.79 0.96 15 13 O -0.20 -5.99 10.58 -9.30 -0.10 -6.09 15 14 C 0.03 1.01 7.20 22.99 0.17 1.17 15 15 C -0.13 -4.25 6.38 -20.22 -0.13 -4.38 15 16 C -0.08 -2.15 10.10 22.44 0.23 -1.92 15 17 C -0.12 -2.36 10.03 22.27 0.22 -2.14 15 18 C -0.08 -1.56 9.79 22.32 0.22 -1.34 15 19 C -0.04 -1.03 6.33 22.38 0.14 -0.89 15 20 Cl -0.06 -1.36 28.96 -2.72 -0.08 -1.44 15 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 22 H 0.01 0.58 7.20 -2.39 -0.02 0.56 15 23 H 0.02 0.74 7.57 -2.38 -0.02 0.72 15 24 H 0.07 2.72 8.14 -2.39 -0.02 2.71 15 25 H 0.06 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.24 4.98 8.06 -2.91 -0.02 4.96 15 27 H 0.14 3.67 8.06 -2.91 -0.02 3.65 15 28 H 0.17 2.20 8.06 -2.91 -0.02 2.17 15 29 H 0.18 2.20 8.06 -2.92 -0.02 2.18 15 Total: -1.00 -67.77 273.49 5.65 -62.13 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.10 Total: 2.01 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 2.54 Total: -44.29 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.30 Total: -58.70 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.10 Total: -6.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -67.77 5.65 -62.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.486 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds