Wall clock time and date at job start Mon Mar 30 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.38967 * 119.68423 * 269.72719 * 11 10 9 13 13 C 1.36591 * 120.80915 * 179.75121 * 12 11 10 14 14 C 1.39291 * 119.85534 * 0.51650 * 13 12 11 15 15 N 1.37033 * 133.84420 * 179.76806 * 14 13 12 16 16 H 0.97003 * 125.45143 * 359.97350 * 15 14 13 17 17 N 1.39875 * 109.10035 * 179.97438 * 15 14 13 18 18 C 1.30302 * 110.08069 * 359.97438 * 17 15 14 19 19 Cl 1.73597 * 126.11755 * 180.02562 * 18 17 15 20 20 C 1.40819 * 119.41117 * 359.74177 * 14 13 12 21 21 C 1.36471 * 119.68498 * 89.99421 * 11 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.07995 * 119.59282 * 359.97438 * 12 11 10 28 28 H 1.08001 * 120.07264 * 180.28240 * 13 12 11 29 29 H 1.07994 * 120.18807 * 359.96009 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1528 -5.5711 1.1892 13 6 0.4657 -6.7514 1.2113 14 6 0.1068 -7.3674 0.0146 15 7 -0.5614 -8.5230 -0.2951 16 1 -0.9232 -9.1531 0.3475 17 7 -0.6382 -8.6485 -1.6861 18 6 -0.0550 -7.6342 -2.2597 19 17 0.0909 -7.3705 -3.9693 20 6 0.4540 -6.7595 -1.2073 21 6 1.1533 -5.5475 -1.2036 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 1.4331 -5.0996 2.1194 28 1 0.2045 -7.2080 2.1545 29 1 1.4234 -5.0738 -2.1358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260380282.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:11 Heat of formation + Delta-G solvation = 61.885602 kcal Electronic energy + Delta-G solvation = -14976.200974 eV Core-core repulsion = 12311.791590 eV Total energy + Delta-G solvation = -2664.409383 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.22635 -37.64046 -36.84418 -33.75659 -32.32493 -31.38187 -29.84250 -28.34051 -24.93643 -22.99310 -22.05017 -21.60223 -20.10384 -17.84897 -16.65045 -16.19873 -15.20804 -15.10782 -14.97297 -14.46668 -13.71340 -13.62660 -12.66234 -12.58166 -12.32030 -11.87192 -11.80570 -11.63514 -11.16158 -10.95991 -10.77694 -10.64220 -10.51877 -9.96536 -9.83562 -9.51854 -9.09200 -8.55647 -8.35258 -7.67336 -6.00162 -4.03159 0.96941 1.39125 1.66549 2.31341 2.92568 3.30953 3.38749 3.42439 3.95399 4.45832 4.50831 4.75573 5.13073 5.22465 5.35677 5.44267 5.63786 5.90603 6.03974 6.22569 6.36443 6.56897 6.63577 6.86643 7.01979 7.07994 7.25149 7.37948 7.67959 7.80972 7.99813 8.40091 9.04295 9.61097 11.10796 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029810 B = 0.004852 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.071300 B = 5769.637384 C = 6357.481085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.076 4.076 11 C -0.087 4.087 12 C -0.053 4.053 13 C -0.145 4.145 14 C 0.122 3.878 15 N -0.500 5.500 16 H 0.443 0.557 17 N -0.242 5.242 18 C 0.143 3.857 19 Cl 0.018 6.982 20 C -0.161 4.161 21 C -0.043 4.043 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -15.854 -0.804 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.114 4.114 11 C -0.089 4.089 12 C -0.074 4.074 13 C -0.167 4.167 14 C 0.008 3.992 15 N -0.219 5.219 16 H 0.288 0.712 17 N -0.061 5.061 18 C -0.060 4.060 19 Cl 0.046 6.954 20 C -0.169 4.169 21 C -0.063 4.063 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.200 -16.801 -1.160 16.842 hybrid contribution 0.453 1.303 0.290 1.410 sum 0.252 -15.497 -0.871 15.524 Atomic orbital electron populations 1.69983 1.06052 1.26493 1.50763 1.25025 0.94827 0.99245 0.95333 0.86556 0.80134 0.83855 0.77571 1.19705 1.21028 1.21063 1.21295 0.93100 0.90954 1.50647 0.92509 1.19104 0.93707 0.90509 0.97603 1.20812 0.98238 0.90761 1.01551 1.19939 0.99553 0.97513 0.91866 1.20822 0.94805 0.93077 0.98689 1.19767 1.04750 0.97739 0.94447 1.18692 0.96697 0.88467 0.95369 1.45562 1.52357 1.20974 1.02967 0.71209 1.76428 1.19858 1.20722 0.89089 1.23733 1.00463 0.94280 0.87524 1.98401 1.96320 1.95333 1.05385 1.19446 1.08550 0.99120 0.89829 1.20275 0.95374 0.91690 0.98985 0.93048 0.96430 0.96345 0.92042 0.92046 0.84876 0.85607 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.70 4.96 -27.88 -0.14 0.56 15 10 C -0.08 -1.49 5.26 -27.89 -0.15 -1.63 15 11 C -0.09 -1.49 5.10 -104.99 -0.54 -2.03 15 12 C -0.05 -0.79 9.60 -39.91 -0.38 -1.18 15 13 C -0.15 -1.91 10.03 -39.78 -0.40 -2.30 15 14 C 0.12 1.74 7.34 -84.17 -0.62 1.12 15 15 N -0.50 -6.26 7.37 32.36 0.24 -6.02 15 16 H 0.44 3.85 8.96 -182.77 -1.64 2.21 15 17 N -0.24 -3.51 12.55 34.13 0.43 -3.09 15 18 C 0.14 2.14 8.09 -15.09 -0.12 2.02 15 19 Cl 0.02 0.23 29.33 -51.86 -1.52 -1.29 15 20 C -0.16 -2.56 6.37 -105.18 -0.67 -3.23 15 21 C -0.04 -0.71 9.68 -39.59 -0.38 -1.10 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.96 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 25 H 0.06 1.16 8.07 -51.93 -0.42 0.74 15 26 H 0.06 1.14 8.08 -51.93 -0.42 0.72 15 27 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 29 H 0.13 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -30.84 276.01 -8.92 -39.76 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.13 Total: -3.01 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.81 Total: -20.95 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 1.40 Total: -34.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.52 Total: -1.29 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.84 -8.92 -39.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380282.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.648 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds