Wall clock time and date at job start Mon Mar 30 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.38967 * 119.68423 * 269.72719 * 11 10 9 13 13 C 1.36591 * 120.80915 * 179.75121 * 12 11 10 14 14 C 1.39291 * 119.85534 * 0.51650 * 13 12 11 15 15 N 1.37033 * 133.84420 * 179.76806 * 14 13 12 16 16 H 0.97003 * 125.45143 * 359.97350 * 15 14 13 17 17 N 1.39875 * 109.10035 * 179.97438 * 15 14 13 18 18 C 1.30302 * 110.08069 * 359.97438 * 17 15 14 19 19 Cl 1.73597 * 126.11755 * 180.02562 * 18 17 15 20 20 C 1.40819 * 119.41117 * 359.74177 * 14 13 12 21 21 C 1.36471 * 119.68498 * 89.99421 * 11 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.07995 * 119.59282 * 359.97438 * 12 11 10 28 28 H 1.08001 * 120.07264 * 180.28240 * 13 12 11 29 29 H 1.07994 * 120.18807 * 359.96009 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1528 -5.5711 1.1892 13 6 0.4657 -6.7514 1.2113 14 6 0.1068 -7.3674 0.0146 15 7 -0.5614 -8.5230 -0.2951 16 1 -0.9232 -9.1531 0.3475 17 7 -0.6382 -8.6485 -1.6861 18 6 -0.0550 -7.6342 -2.2597 19 17 0.0909 -7.3705 -3.9693 20 6 0.4540 -6.7595 -1.2073 21 6 1.1533 -5.5475 -1.2036 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 1.4331 -5.0996 2.1194 28 1 0.2045 -7.2080 2.1545 29 1 1.4234 -5.0738 -2.1358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260380282.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:10 Heat of formation + Delta-G solvation = 43.905143 kcal Electronic energy + Delta-G solvation = -14976.980665 eV Core-core repulsion = 12311.791590 eV Total energy + Delta-G solvation = -2665.189075 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.35412 -38.87133 -37.91905 -35.60921 -33.77855 -32.87052 -30.98747 -29.91743 -26.72374 -24.19978 -23.57036 -22.82977 -21.57617 -18.97219 -18.51390 -17.62102 -16.50102 -16.34811 -16.23607 -16.18763 -15.01940 -14.78586 -14.41425 -14.28433 -13.63431 -13.40783 -13.08859 -12.95521 -12.81580 -12.52450 -12.35100 -12.09774 -11.86761 -11.55541 -11.49106 -11.12557 -10.96930 -10.51603 -9.71889 -8.87969 -8.15246 -6.26391 -0.17868 0.32545 0.45527 1.17344 1.43028 1.43847 1.56708 1.89287 2.44304 2.75555 3.17997 3.37335 3.65613 3.97203 4.05437 4.30256 4.44545 4.60624 4.78862 4.95833 5.02264 5.10928 5.23493 5.36512 5.56949 5.60176 5.78421 5.91143 5.92635 6.16952 6.28904 6.38563 6.91698 7.42903 8.96107 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029810 B = 0.004852 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.071300 B = 5769.637384 C = 6357.481085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.034 3.966 10 C -0.062 4.062 11 C -0.106 4.106 12 C -0.063 4.063 13 C -0.128 4.128 14 C 0.122 3.878 15 N -0.482 5.482 16 H 0.460 0.540 17 N -0.248 5.248 18 C 0.131 3.869 19 Cl 0.028 6.972 20 C -0.183 4.183 21 C -0.054 4.054 22 H 0.262 0.738 23 H -0.006 1.006 24 H -0.013 1.013 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.167 0.833 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -16.656 0.123 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.003 4.003 10 C -0.099 4.099 11 C -0.108 4.108 12 C -0.083 4.083 13 C -0.150 4.150 14 C 0.006 3.994 15 N -0.203 5.203 16 H 0.310 0.690 17 N -0.067 5.067 18 C -0.072 4.072 19 Cl 0.056 6.944 20 C -0.191 4.191 21 C -0.074 4.074 22 H 0.071 0.929 23 H 0.013 0.987 24 H 0.006 0.994 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.184 0.816 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.387 -17.637 -0.227 17.642 hybrid contribution 0.217 1.462 -0.009 1.478 sum 0.604 -16.175 -0.236 16.188 Atomic orbital electron populations 1.70118 1.07821 1.27551 1.51945 1.25962 0.95693 1.03281 0.94919 0.85437 0.79261 0.78982 0.77595 1.18348 1.20732 1.20513 1.21769 0.93706 0.92210 1.50045 0.91794 1.18954 0.94106 0.92339 0.94904 1.20529 0.97121 0.90147 1.02104 1.19781 1.00827 0.96966 0.93221 1.21014 0.95153 0.93824 0.98329 1.20109 1.02666 0.96596 0.95611 1.18904 0.96380 0.88761 0.95326 1.45593 1.51358 1.20684 1.02676 0.69048 1.76394 1.19706 1.20569 0.90018 1.23852 1.00804 0.94319 0.88198 1.98399 1.96276 1.95310 1.04404 1.19613 1.09127 0.99251 0.91099 1.20268 0.95996 0.92355 0.98792 0.92925 0.98737 0.99429 0.91943 0.90965 0.83368 0.81576 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 15 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 15 3 Si 0.96 43.78 29.54 68.60 2.03 45.80 15 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 15 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.03 1.76 4.96 29.85 0.15 1.90 15 10 C -0.06 -2.42 5.26 29.85 0.16 -2.27 15 11 C -0.11 -3.63 5.10 -20.10 -0.10 -3.73 15 12 C -0.06 -1.76 9.60 22.06 0.21 -1.55 15 13 C -0.13 -3.00 10.03 22.14 0.22 -2.78 15 14 C 0.12 3.21 7.34 39.22 0.29 3.50 15 15 N -0.48 -10.87 7.37 -51.53 -0.38 -11.25 15 16 H 0.46 6.55 8.96 -213.46 -1.91 4.64 15 17 N -0.25 -6.78 12.55 -45.94 -0.58 -7.36 15 18 C 0.13 3.81 8.09 86.93 0.70 4.51 15 19 Cl 0.03 0.73 29.33 -2.72 -0.08 0.65 15 20 C -0.18 -5.66 6.37 -20.22 -0.13 -5.79 15 21 C -0.05 -1.80 9.68 22.27 0.22 -1.58 15 22 H 0.26 14.94 8.31 -92.70 -0.77 14.16 15 23 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 15 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 25 H 0.06 2.39 8.07 -2.38 -0.02 2.37 15 26 H 0.07 2.63 8.08 -2.39 -0.02 2.62 15 27 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 28 H 0.17 2.51 8.06 -2.91 -0.02 2.49 15 29 H 0.13 4.15 8.06 -2.91 -0.02 4.13 15 Total: -1.00 -66.40 276.01 2.95 -63.45 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -0.73 Total: 2.26 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 2.41 Total: -37.17 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -0.67 Total: -74.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -66.40 2.95 -63.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260380282.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.356 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds