Wall clock time and date at job start Mon Mar 30 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40514 * 119.84545 * 2 1 4 4 C 1.35997 * 119.71547 * 180.02562 * 3 2 1 5 5 C 1.40955 * 119.33385 * 359.94971 * 4 3 2 6 6 N 1.32514 * 132.33109 * 179.97438 * 5 4 3 7 7 C 1.33584 * 109.15979 * 180.02562 * 6 5 4 8 8 C 1.50701 * 125.69427 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47375 * 90.02108 * 8 7 6 10 10 H 1.08000 * 119.99804 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00067 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00140 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00039 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46981 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46756 * 120.00054 * 13 11 9 16 16 H 1.48500 * 109.47122 * 240.00218 * 13 11 9 17 17 C 1.35191 * 108.61567 * 359.97438 * 7 6 5 18 18 Cl 1.73607 * 126.41463 * 179.97438 * 17 7 6 19 19 N 1.36811 * 107.17245 * 0.02562 * 17 7 6 20 20 C 1.34923 * 119.84417 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.46816 * 270.04479 * 1 2 3 22 22 H 1.08999 * 109.46920 * 30.04434 * 1 2 3 23 23 H 1.08994 * 109.47051 * 150.04535 * 1 2 3 24 24 H 1.08001 * 120.13688 * 0.02562 * 3 2 1 25 25 H 1.08004 * 120.33452 * 180.23201 * 4 3 2 26 26 H 1.09004 * 109.46911 * 210.02216 * 8 7 6 27 27 H 1.08993 * 109.46558 * 330.02166 * 8 7 6 28 28 H 0.97002 * 120.00439 * 179.97438 * 12 11 9 29 29 H 1.07995 * 119.70089 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.2188 0.0000 4 6 3.5662 1.2157 -0.0005 5 6 4.2540 -0.0147 0.0000 6 7 5.5445 -0.3156 -0.0007 7 6 5.6849 -1.6441 -0.0002 8 6 6.9944 -2.3899 -0.0014 9 6 7.4323 -2.6383 1.4191 10 1 6.8235 -2.2905 2.2405 11 6 8.6107 -3.3086 1.6699 12 7 9.3529 -3.7308 0.6697 13 14 9.1539 -3.6159 3.4307 14 1 8.1507 -3.0447 4.3650 15 1 9.2715 -5.0776 3.6644 16 1 10.4708 -2.9699 3.6623 17 6 4.4562 -2.2079 0.0014 18 17 4.1021 -3.9075 0.0020 19 7 3.5439 -1.1883 0.0014 20 6 2.1784 -1.1703 0.0005 21 1 -0.3633 0.0008 1.0277 22 1 -0.3633 0.8896 -0.5145 23 1 -0.3633 -0.8903 -0.5131 24 1 1.6660 2.1539 0.0004 25 1 4.1138 2.1466 0.0032 26 1 6.8692 -3.3431 -0.5150 27 1 7.7500 -1.7964 -0.5160 28 1 10.1822 -4.2021 0.8462 29 1 1.6310 -2.1012 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392530.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:11 Heat of formation + Delta-G solvation = 50.952289 kcal Electronic energy + Delta-G solvation = -15365.769436 eV Core-core repulsion = 12700.885949 eV Total energy + Delta-G solvation = -2664.883487 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.80798 -38.92969 -37.69508 -35.49324 -34.57822 -33.28110 -31.22226 -29.01002 -27.36329 -25.37715 -24.04595 -23.09789 -21.37271 -18.95279 -18.55356 -17.72544 -17.08360 -16.67951 -16.31689 -15.70840 -15.35533 -14.55542 -14.36004 -14.07873 -13.61768 -13.28704 -13.16550 -13.10924 -12.78224 -12.63045 -12.48349 -12.38344 -12.33009 -11.97257 -11.66868 -11.41157 -11.03007 -10.59558 -9.46766 -8.79545 -8.19629 -6.31151 -0.19220 0.17735 0.53610 1.38332 1.39839 1.52642 1.75524 1.88317 2.41140 2.52614 3.10530 3.26932 3.44922 3.82968 3.92612 4.09321 4.34730 4.51692 4.71185 4.81398 4.90978 5.04635 5.23507 5.24740 5.30498 5.40018 5.50216 5.61565 5.71640 6.04486 6.14593 6.75202 6.85200 7.35159 8.91142 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.006178 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.807606 B = 4531.108886 C = 4880.645264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.100 4.100 3 C -0.069 4.069 4 C -0.099 4.099 5 C 0.217 3.783 6 N -0.532 5.532 7 C 0.106 3.894 8 C 0.100 3.900 9 C -0.518 4.518 10 H 0.044 0.956 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.274 1.274 17 C -0.056 4.056 18 Cl 0.006 6.994 19 N -0.361 5.361 20 C 0.026 3.974 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.191 0.809 25 H 0.170 0.830 26 H 0.027 0.973 27 H 0.006 0.994 28 H 0.267 0.733 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.071 7.696 -1.290 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.119 4.119 5 C -0.026 4.026 6 N -0.254 5.254 7 C -0.027 4.027 8 C 0.062 3.938 9 C -0.557 4.557 10 H 0.062 0.938 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.199 1.199 17 C -0.193 4.193 18 Cl 0.034 6.966 19 N -0.035 5.035 20 C -0.095 4.095 21 H 0.107 0.893 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.209 0.791 25 H 0.188 0.812 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.296 7.908 -1.340 21.824 hybrid contribution 0.351 -1.345 0.642 1.531 sum -19.946 6.563 -0.698 21.009 Atomic orbital electron populations 1.20791 0.85569 1.05023 1.04150 1.20039 0.99283 0.90516 1.00482 1.21544 0.92026 0.99873 0.95847 1.20654 0.95018 0.93330 1.02946 1.21651 0.87257 0.88187 1.05519 1.70759 1.15138 1.13913 1.25567 1.21306 0.94826 0.89424 0.97159 1.17493 0.86153 0.92891 0.97282 1.21097 1.06572 1.36511 0.91503 0.93812 1.25827 0.96116 0.95049 1.01869 1.70067 1.14424 1.39245 1.32812 0.85389 0.78181 0.78264 0.79153 1.19511 1.19574 1.19941 1.21086 0.88776 0.83330 1.26061 1.98313 1.94908 1.05583 1.97755 1.42610 1.06915 1.07184 1.46809 1.22064 0.79428 1.02710 1.05310 0.89340 0.88322 0.90382 0.79146 0.81242 0.95499 0.97529 0.92379 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.00 71.24 0.71 -0.09 15 2 C -0.10 -1.77 5.85 -20.07 -0.12 -1.88 15 3 C -0.07 -1.18 9.74 22.30 0.22 -0.97 15 4 C -0.10 -2.60 10.11 22.41 0.23 -2.37 15 5 C 0.22 8.41 7.81 134.09 1.05 9.46 15 6 N -0.53 -26.22 11.32 -182.24 -2.06 -28.29 15 7 C 0.11 5.52 6.25 41.59 0.26 5.78 15 8 C 0.10 5.86 5.34 29.10 0.16 6.02 15 9 C -0.52 -31.73 9.09 25.60 0.23 -31.50 15 10 H 0.04 2.71 7.74 -2.91 -0.02 2.69 15 11 C 0.01 0.59 5.46 84.66 0.46 1.05 15 12 N -0.93 -57.34 13.29 21.45 0.28 -57.06 15 13 Si 0.97 46.31 29.54 68.60 2.03 48.34 15 14 H -0.27 -12.75 7.11 99.48 0.71 -12.05 15 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 16 H -0.27 -12.68 7.11 99.48 0.71 -11.97 15 17 C -0.06 -2.46 7.59 83.21 0.63 -1.83 15 18 Cl 0.01 0.25 28.84 -2.72 -0.08 0.17 15 19 N -0.36 -13.31 2.95 -342.04 -1.01 -14.32 15 20 C 0.03 0.67 10.54 83.19 0.88 1.55 15 21 H 0.09 0.57 8.14 -2.38 -0.02 0.56 15 22 H 0.10 0.40 8.09 -2.39 -0.02 0.38 15 23 H 0.08 0.56 8.07 -2.39 -0.02 0.54 15 24 H 0.19 1.38 8.06 -2.91 -0.02 1.35 15 25 H 0.17 3.68 8.06 -2.91 -0.02 3.66 15 26 H 0.03 1.61 7.89 -2.38 -0.02 1.59 15 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 29 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -77.25 275.57 5.03 -72.22 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: 1.16 Total: -6.29 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.70 Total: -14.78 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -2.79 Total: -99.66 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -77.25 5.03 -72.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392530.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.177 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds