Wall clock time and date at job start Mon Mar 30 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38879 * 120.03345 * 2 1 4 4 C 1.38520 * 119.48250 * 180.02562 * 3 2 1 5 5 C 1.37235 * 121.04822 * 0.02562 * 4 3 2 6 6 C 1.41773 * 120.54401 * 359.97438 * 5 4 3 7 7 C 1.36514 * 120.03977 * 180.02562 * 2 1 3 8 8 S 1.77408 * 133.39035 * 359.97438 * 7 2 1 9 9 O 1.42101 * 107.70041 * 68.12751 * 8 7 2 10 10 O 1.42095 * 107.70082 * 291.86956 * 8 7 2 11 11 C 1.78090 * 98.83745 * 179.97438 * 8 7 2 12 12 C 1.38794 * 128.19760 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00211 * 0.02562 * 12 11 8 14 14 C 1.40664 * 120.00144 * 180.02562 * 12 11 8 15 15 N 1.30533 * 120.00015 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47205 * 89.99964 * 16 14 12 18 18 H 1.48508 * 109.46925 * 209.99866 * 16 14 12 19 19 H 1.48501 * 109.47121 * 329.99173 * 16 14 12 20 20 C 1.37965 * 103.60117 * 0.02562 * 11 8 7 21 21 H 1.09002 * 109.47178 * 269.96440 * 1 2 3 22 22 H 1.09000 * 109.47043 * 29.96738 * 1 2 3 23 23 H 1.09000 * 109.46955 * 149.97051 * 1 2 3 24 24 H 1.08002 * 120.26290 * 0.06725 * 3 2 1 25 25 H 1.08003 * 119.48204 * 180.29447 * 4 3 2 26 26 H 1.08000 * 119.72465 * 180.02562 * 5 4 3 27 27 H 0.96997 * 120.00170 * 179.97438 * 15 14 12 28 28 H 1.08002 * 120.91367 * 180.02562 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2021 1.2023 0.0000 4 6 3.5873 1.1890 -0.0005 5 6 4.2837 0.0065 -0.0016 6 6 3.5973 -1.2340 -0.0016 7 6 2.1904 -1.1818 -0.0005 8 16 1.6845 -2.8822 -0.0007 9 8 1.0774 -3.1522 -1.2568 10 8 1.0785 -3.1528 1.2557 11 6 3.2931 -3.6463 -0.0023 12 6 3.6004 -4.9998 -0.0025 13 1 2.8079 -5.7335 -0.0021 14 6 4.9441 -5.4160 -0.0033 15 7 5.9020 -4.5293 -0.0043 16 14 5.3576 -7.2377 -0.0044 17 1 5.4666 -7.7197 -1.4047 18 1 6.6500 -7.4523 0.6950 19 1 4.2852 -7.9891 0.6960 20 6 4.1615 -2.5742 -0.0020 21 1 -0.3634 -0.0006 1.0277 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5143 24 1 1.6670 2.1404 0.0011 25 1 4.1278 2.1240 0.0043 26 1 5.3636 0.0211 -0.0016 27 1 6.8285 -4.8163 -0.0045 28 1 5.2308 -2.7263 -0.0032 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260397656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:12 Heat of formation + Delta-G solvation = -43.275952 kcal Electronic energy + Delta-G solvation = -15907.503419 eV Core-core repulsion = 13208.284843 eV Total energy + Delta-G solvation = -2699.218575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.44409 -36.08079 -35.50735 -34.81275 -33.01387 -31.78048 -29.58742 -26.32091 -25.87968 -22.47994 -21.28122 -19.74693 -18.22479 -17.40071 -16.22788 -16.13169 -14.87225 -14.83513 -14.51347 -13.85527 -13.26497 -13.23463 -13.02437 -12.52535 -12.04160 -11.88009 -11.72569 -11.53938 -11.40266 -11.21610 -11.18771 -11.03876 -10.70379 -10.36580 -10.35251 -9.67288 -9.24805 -9.14183 -8.38724 -7.70938 -7.25516 -4.92572 1.39705 1.41223 2.00677 2.68990 2.72471 2.79756 3.26596 3.43627 4.08169 4.24448 4.48779 4.73718 5.33568 5.48285 5.64487 5.84528 5.92258 6.00491 6.10927 6.16060 6.21373 6.35919 6.55565 6.87305 6.95021 7.04001 7.19986 7.27108 7.47000 7.77624 7.85398 8.16994 8.37614 9.39262 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032359 B = 0.008404 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.085265 B = 3331.091180 C = 4013.312850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 C -0.222 4.222 4 C -0.055 4.055 5 C -0.182 4.182 6 C 0.080 3.920 7 C -0.712 4.712 8 S 2.526 3.474 9 O -0.964 6.964 10 O -0.963 6.963 11 C -0.410 4.410 12 C -0.279 4.279 13 H 0.102 0.898 14 C 0.044 3.956 15 N -0.714 5.714 16 Si 0.934 3.066 17 H -0.257 1.257 18 H -0.266 1.266 19 H -0.249 1.249 20 C -0.348 4.348 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.297 0.703 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 2.154 0.058 2.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 C -0.242 4.242 4 C -0.074 4.074 5 C -0.201 4.201 6 C 0.078 3.922 7 C -0.802 4.802 8 S 2.713 3.287 9 O -0.961 6.961 10 O -0.960 6.960 11 C -0.508 4.508 12 C -0.304 4.304 13 H 0.120 0.880 14 C -0.183 4.183 15 N -0.333 5.333 16 Si 0.755 3.245 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.173 1.173 20 C -0.373 4.373 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.109 0.891 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.245 1.762 0.061 2.159 hybrid contribution 1.447 0.037 -0.008 1.447 sum 0.202 1.799 0.052 1.811 Atomic orbital electron populations 1.21050 0.92328 1.02972 1.02792 1.18375 0.94110 0.91132 0.90366 1.20741 0.94078 0.96254 1.13099 1.20741 0.94248 0.96968 0.95408 1.20909 0.98873 0.91147 1.09159 1.19727 0.90589 0.94588 0.87266 1.29672 1.04454 1.18474 1.27636 1.03841 0.75607 0.75340 0.73934 1.93495 1.75799 1.84358 1.42447 1.93494 1.75800 1.84334 1.42412 1.28411 1.17108 1.00368 1.04879 1.19226 0.93529 0.90922 1.26721 0.87993 1.26636 0.95749 1.02500 0.93441 1.69460 1.02341 1.37059 1.24426 0.85830 0.79727 0.78523 0.80377 1.18172 1.19047 1.17255 1.21812 1.03625 0.85592 1.26236 0.90303 0.90850 0.91772 0.86844 0.87230 0.86995 0.89074 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.94 36.01 0.36 -1.95 15 2 C 0.06 1.28 5.85 -105.01 -0.61 0.67 15 3 C -0.22 -4.15 9.78 -39.24 -0.38 -4.54 15 4 C -0.06 -1.03 9.95 -39.84 -0.40 -1.43 15 5 C -0.18 -3.85 10.09 -38.60 -0.39 -4.24 15 6 C 0.08 1.95 6.02 -104.73 -0.63 1.32 15 7 C -0.71 -16.88 6.22 -39.24 -0.24 -17.12 15 8 S 2.53 62.07 5.58 -107.50 -0.60 61.47 15 9 O -0.96 -24.71 18.01 -56.97 -1.03 -25.74 15 10 O -0.96 -24.70 18.01 -56.97 -1.03 -25.73 15 11 C -0.41 -10.53 6.30 -39.48 -0.25 -10.78 15 12 C -0.28 -6.73 9.42 -38.46 -0.36 -7.09 15 13 H 0.10 2.20 7.86 -52.49 -0.41 1.78 15 14 C 0.04 0.97 5.51 -17.19 -0.09 0.87 15 15 N -0.71 -16.20 10.32 55.59 0.57 -15.62 15 16 Si 0.93 15.82 29.57 -169.99 -5.03 10.80 15 17 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 18 H -0.27 -4.34 7.11 56.52 0.40 -3.93 15 19 H -0.25 -4.12 7.11 56.52 0.40 -3.72 15 20 C -0.35 -8.94 9.52 -36.83 -0.35 -9.29 15 21 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.07 1.01 8.09 -51.93 -0.42 0.59 15 23 H 0.06 1.13 7.77 -51.93 -0.40 0.72 15 24 H 0.11 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.11 1.63 8.06 -52.48 -0.42 1.21 15 26 H 0.11 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.30 5.82 8.29 -40.82 -0.34 5.48 15 28 H 0.16 4.23 5.37 -52.49 -0.28 3.95 15 LS Contribution 261.10 15.07 3.93 3.93 Total: -1.00 -29.56 261.10 -8.87 -38.43 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.34 Total: 6.05 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: -3.36 Total: -53.59 kcal Atomic # 7 Polarization: -16.20 SS G_CDS: 0.57 Total: -15.62 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.05 Total: -51.47 kcal Atomic # 14 Polarization: 15.82 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 16 Polarization: 62.07 SS G_CDS: -0.60 Total: 61.47 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.56 -8.87 -38.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.850 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds