Wall clock time and date at job start Mon Mar 30 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38879 * 120.03345 * 2 1 4 4 C 1.38520 * 119.48250 * 180.02562 * 3 2 1 5 5 C 1.37235 * 121.04822 * 0.02562 * 4 3 2 6 6 C 1.41773 * 120.54401 * 359.97438 * 5 4 3 7 7 C 1.36514 * 120.03977 * 180.02562 * 2 1 3 8 8 S 1.77408 * 133.39035 * 359.97438 * 7 2 1 9 9 O 1.42101 * 107.70041 * 68.12751 * 8 7 2 10 10 O 1.42095 * 107.70082 * 291.86956 * 8 7 2 11 11 C 1.78090 * 98.83745 * 179.97438 * 8 7 2 12 12 C 1.38794 * 128.19760 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00211 * 0.02562 * 12 11 8 14 14 C 1.40664 * 120.00144 * 180.02562 * 12 11 8 15 15 N 1.30533 * 120.00015 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47205 * 89.99964 * 16 14 12 18 18 H 1.48508 * 109.46925 * 209.99866 * 16 14 12 19 19 H 1.48501 * 109.47121 * 329.99173 * 16 14 12 20 20 C 1.37965 * 103.60117 * 0.02562 * 11 8 7 21 21 H 1.09002 * 109.47178 * 269.96440 * 1 2 3 22 22 H 1.09000 * 109.47043 * 29.96738 * 1 2 3 23 23 H 1.09000 * 109.46955 * 149.97051 * 1 2 3 24 24 H 1.08002 * 120.26290 * 0.06725 * 3 2 1 25 25 H 1.08003 * 119.48204 * 180.29447 * 4 3 2 26 26 H 1.08000 * 119.72465 * 180.02562 * 5 4 3 27 27 H 0.96997 * 120.00170 * 179.97438 * 15 14 12 28 28 H 1.08002 * 120.91367 * 180.02562 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2021 1.2023 0.0000 4 6 3.5873 1.1890 -0.0005 5 6 4.2837 0.0065 -0.0016 6 6 3.5973 -1.2340 -0.0016 7 6 2.1904 -1.1818 -0.0005 8 16 1.6845 -2.8822 -0.0007 9 8 1.0774 -3.1522 -1.2568 10 8 1.0785 -3.1528 1.2557 11 6 3.2931 -3.6463 -0.0023 12 6 3.6004 -4.9998 -0.0025 13 1 2.8079 -5.7335 -0.0021 14 6 4.9441 -5.4160 -0.0033 15 7 5.9020 -4.5293 -0.0043 16 14 5.3576 -7.2377 -0.0044 17 1 5.4666 -7.7197 -1.4047 18 1 6.6500 -7.4523 0.6950 19 1 4.2852 -7.9891 0.6960 20 6 4.1615 -2.5742 -0.0020 21 1 -0.3634 -0.0006 1.0277 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5143 24 1 1.6670 2.1404 0.0011 25 1 4.1278 2.1240 0.0043 26 1 5.3636 0.0211 -0.0016 27 1 6.8285 -4.8163 -0.0045 28 1 5.2308 -2.7263 -0.0032 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260397656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:12 Heat of formation + Delta-G solvation = -62.807501 kcal Electronic energy + Delta-G solvation = -15908.350370 eV Core-core repulsion = 13208.284843 eV Total energy + Delta-G solvation = -2700.065527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07503 -38.06457 -37.22965 -36.79652 -34.68383 -33.32091 -31.32500 -27.80062 -27.61817 -24.17393 -22.94001 -21.48032 -20.02599 -19.24636 -17.97835 -17.82753 -16.81253 -16.42839 -16.07112 -15.48572 -14.92736 -14.71356 -14.67375 -14.17255 -13.49823 -13.45178 -13.31416 -13.21156 -13.07766 -13.02085 -12.97056 -12.80620 -12.09479 -11.98202 -11.88893 -11.50437 -11.04887 -10.82890 -10.03938 -9.40211 -8.92335 -6.74522 -0.48052 -0.30093 0.38589 1.25613 1.30910 1.51654 1.67529 2.03181 2.20493 2.57443 2.58655 3.01208 3.83674 4.02622 4.06630 4.14213 4.44895 4.49810 4.59885 4.68805 4.76171 4.80447 5.01266 5.24126 5.32641 5.40745 5.61150 5.65175 5.68943 6.02952 6.19364 6.35808 6.50841 7.79480 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032359 B = 0.008404 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.085265 B = 3331.091180 C = 4013.312850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.040 3.960 3 C -0.206 4.206 4 C -0.047 4.047 5 C -0.197 4.197 6 C 0.050 3.950 7 C -0.728 4.728 8 S 2.532 3.468 9 O -0.985 6.985 10 O -0.985 6.985 11 C -0.440 4.440 12 C -0.315 4.315 13 H 0.115 0.885 14 C 0.004 3.996 15 N -0.744 5.744 16 Si 1.009 2.991 17 H -0.249 1.249 18 H -0.252 1.252 19 H -0.243 1.243 20 C -0.381 4.381 21 H 0.094 0.906 22 H 0.113 0.887 23 H 0.048 0.952 24 H 0.162 0.838 25 H 0.158 0.842 26 H 0.124 0.876 27 H 0.310 0.690 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 3.684 0.087 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 C -0.225 4.225 4 C -0.064 4.064 5 C -0.216 4.216 6 C 0.048 3.952 7 C -0.821 4.821 8 S 2.722 3.278 9 O -0.983 6.983 10 O -0.982 6.982 11 C -0.537 4.537 12 C -0.339 4.339 13 H 0.133 0.867 14 C -0.220 4.220 15 N -0.363 5.363 16 Si 0.824 3.176 17 H -0.173 1.173 18 H -0.176 1.176 19 H -0.166 1.166 20 C -0.406 4.406 21 H 0.112 0.888 22 H 0.132 0.868 23 H 0.068 0.932 24 H 0.179 0.821 25 H 0.176 0.824 26 H 0.142 0.858 27 H 0.123 0.877 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.206 3.299 0.090 3.514 hybrid contribution 1.419 -0.196 -0.019 1.432 sum 0.212 3.103 0.072 3.111 Atomic orbital electron populations 1.21201 0.89925 1.04288 1.04190 1.19024 0.96289 0.90924 0.89899 1.21376 0.94353 0.97144 1.09584 1.21314 0.94720 0.97743 0.92655 1.21247 0.99889 0.91084 1.09424 1.19931 0.91331 0.95127 0.88822 1.29605 1.04452 1.18310 1.29708 1.03419 0.75151 0.76093 0.73103 1.93443 1.76502 1.85226 1.43094 1.93442 1.76501 1.85201 1.43040 1.28707 1.17485 1.01392 1.06098 1.19794 0.95500 0.90927 1.27704 0.86688 1.27721 0.94647 1.07443 0.92192 1.69476 1.03296 1.39404 1.24164 0.84791 0.80005 0.71940 0.80838 1.17308 1.17584 1.16571 1.21850 1.03247 0.86800 1.28666 0.88778 0.86838 0.93244 0.82078 0.82418 0.85821 0.87726 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.94 71.24 0.71 -3.73 15 2 C 0.04 1.59 5.85 -20.11 -0.12 1.47 15 3 C -0.21 -6.75 9.78 22.49 0.22 -6.53 15 4 C -0.05 -1.55 9.95 22.10 0.22 -1.33 15 5 C -0.20 -8.15 10.09 22.91 0.23 -7.91 15 6 C 0.05 2.48 6.02 -19.93 -0.12 2.36 15 7 C -0.73 -34.87 6.22 22.49 0.14 -34.73 15 8 S 2.53 129.92 5.58 -56.49 -0.32 129.60 15 9 O -0.99 -52.72 18.01 -128.19 -2.31 -55.03 15 10 O -0.98 -52.60 18.01 -128.19 -2.31 -54.91 15 11 C -0.44 -23.82 6.30 22.34 0.14 -23.68 15 12 C -0.31 -15.87 9.42 23.00 0.22 -15.65 15 13 H 0.12 5.19 7.86 -2.91 -0.02 5.17 15 14 C 0.00 0.17 5.51 85.48 0.47 0.64 15 15 N -0.74 -34.84 10.32 21.96 0.23 -34.61 15 16 Si 1.01 32.05 29.57 68.60 2.03 34.08 15 17 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 18 H -0.25 -7.38 7.11 99.48 0.71 -6.68 15 19 H -0.24 -7.39 7.11 99.48 0.71 -6.68 15 20 C -0.38 -20.62 9.52 24.05 0.23 -20.40 15 21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.11 2.64 8.09 -2.39 -0.02 2.62 15 23 H 0.05 1.70 7.77 -2.39 -0.02 1.68 15 24 H 0.16 3.79 8.06 -2.91 -0.02 3.76 15 25 H 0.16 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.12 4.66 8.06 -2.91 -0.02 4.64 15 27 H 0.31 12.39 8.29 -92.71 -0.77 11.62 15 28 H 0.15 8.35 5.37 -2.91 -0.02 8.34 15 Total: -1.00 -67.20 261.10 0.85 -66.35 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.19 Total: 24.01 kcal Atomic # 6 Polarization: -111.83 SS G_CDS: 2.34 Total: -109.49 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.23 Total: -34.61 kcal Atomic # 8 Polarization: -105.32 SS G_CDS: -4.62 Total: -109.94 kcal Atomic # 14 Polarization: 32.05 SS G_CDS: 2.03 Total: 34.08 kcal Atomic # 16 Polarization: 129.92 SS G_CDS: -0.32 Total: 129.60 kcal Total: -67.20 0.85 -66.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260397656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.542 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds