Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 N 1.30240 * 126.09983 * 60.02870 * 12 2 1 14 14 N 1.39868 * 110.08576 * 180.02562 * 13 12 2 15 15 H 0.97001 * 125.46950 * 180.02562 * 14 13 12 16 16 C 1.37074 * 109.06603 * 359.97438 * 14 13 12 17 17 C 1.40797 * 106.74376 * 359.73930 * 16 14 13 18 18 C 1.39932 * 119.75367 * 180.30114 * 17 16 14 19 19 C 1.36463 * 119.79708 * 0.17134 * 18 17 16 20 20 C 1.38940 * 120.64813 * 359.97438 * 19 18 17 21 21 C 1.37726 * 120.65283 * 359.60257 * 20 19 18 22 22 Cl 1.73596 * 120.14146 * 179.86271 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 27 27 H 1.07990 * 120.10258 * 180.19575 * 18 17 16 28 28 H 1.08000 * 119.67353 * 179.97438 * 19 18 17 29 29 H 1.07996 * 119.67526 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 7 1.7925 -1.9492 1.5530 14 7 2.4219 -2.2612 2.7624 15 1 2.3906 -3.1225 3.2075 16 6 3.0911 -1.1548 3.2174 17 6 2.8797 -0.1349 2.2701 18 6 3.4548 1.1256 2.4667 19 6 4.2195 1.3569 3.5730 20 6 4.4333 0.3526 4.5089 21 6 3.8711 -0.8936 4.3424 22 17 4.1499 -2.1399 5.5183 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 0.7092 1.1618 -3.4843 27 1 3.2937 1.9129 1.7453 28 1 4.6628 2.3304 3.7225 29 1 5.0408 0.5530 5.3790 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = 47.237780 kcal Electronic energy + Delta-G solvation = -15508.053862 eV Core-core repulsion = 12843.009302 eV Total energy + Delta-G solvation = -2665.044561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21491 -38.42552 -37.28376 -36.42726 -33.68705 -31.67598 -30.78453 -29.89976 -27.23518 -24.50692 -23.82066 -23.16581 -20.45486 -18.97897 -18.41464 -17.64731 -16.68732 -16.39561 -15.92818 -15.50374 -15.24078 -14.81862 -14.54121 -13.78458 -13.44056 -13.16711 -12.88995 -12.80936 -12.57798 -12.32781 -12.29931 -12.22149 -12.02547 -11.85291 -11.47480 -11.15028 -10.65308 -10.47999 -9.67222 -8.84980 -8.11391 -6.23940 -0.13845 0.47657 1.07401 1.41270 1.43036 1.51962 1.58809 1.80022 2.44473 2.72964 3.16636 3.57011 3.73417 3.94893 4.02874 4.35637 4.61332 4.63105 4.87835 4.88626 5.02501 5.14595 5.23864 5.45892 5.53630 5.56649 5.76678 5.85858 6.00272 6.25179 6.39384 6.76858 6.80959 7.42810 8.93629 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.034124 B = 0.005842 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.331718 B = 4791.549323 C = 5009.700169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.113 3.887 3 H 0.039 0.961 4 C -0.521 4.521 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.281 5.281 14 N -0.513 5.513 15 H 0.444 0.556 16 C 0.123 3.877 17 C -0.193 4.193 18 C -0.037 4.037 19 C -0.146 4.146 20 C -0.049 4.049 21 C -0.078 4.078 22 Cl -0.066 7.066 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.265 0.735 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 0.665 14.465 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.559 4.559 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.199 1.199 12 C -0.045 4.045 13 N -0.094 5.094 14 N -0.227 5.227 15 H 0.290 0.710 16 C 0.005 3.995 17 C -0.201 4.201 18 C -0.058 4.058 19 C -0.165 4.165 20 C -0.070 4.070 21 C -0.109 4.109 22 Cl -0.037 7.037 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.180 -0.475 14.101 15.403 hybrid contribution 0.377 -0.629 -0.492 0.883 sum 6.558 -1.104 13.608 15.146 Atomic orbital electron populations 1.21597 0.96648 0.99192 1.00357 1.17334 0.93301 0.94135 0.85981 0.94331 1.21172 1.31604 1.12141 0.91030 0.94103 1.25562 0.95111 0.95653 1.01296 1.69959 1.37029 1.23556 1.24299 0.85574 0.78233 0.78601 0.79639 1.20276 1.20379 1.19907 1.24408 0.93822 0.90485 0.95776 1.76627 1.18172 1.16755 0.97833 1.46026 1.45357 1.12147 1.19191 0.71034 1.18729 0.96476 0.89163 0.95156 1.20211 1.06660 0.96866 0.96411 1.20814 0.93320 0.93885 0.97774 1.20985 1.00965 1.01080 0.93504 1.21339 0.96402 0.89103 1.00130 1.19923 1.06179 0.93032 0.91752 1.98338 1.95451 1.53095 1.56837 0.95699 0.95369 0.90952 0.92517 0.84374 0.80919 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.95 71.98 0.64 -5.25 15 2 C 0.11 5.74 2.74 -12.29 -0.03 5.71 15 3 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 4 C -0.52 -29.08 8.55 25.60 0.22 -28.86 15 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 15 6 C 0.02 1.28 5.30 84.65 0.45 1.73 15 7 N -0.91 -50.56 11.32 21.45 0.24 -50.31 15 8 Si 0.95 43.72 29.54 68.60 2.03 45.75 15 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 12 C 0.13 6.11 5.88 44.79 0.26 6.38 15 13 N -0.28 -12.66 12.55 -43.68 -0.55 -13.21 15 14 N -0.51 -18.67 7.37 -51.48 -0.38 -19.05 15 15 H 0.44 13.28 8.96 -213.47 -1.91 11.36 15 16 C 0.12 4.24 7.13 39.22 0.28 4.52 15 17 C -0.19 -7.45 6.32 -20.25 -0.13 -7.58 15 18 C -0.04 -1.15 10.06 22.27 0.22 -0.93 15 19 C -0.15 -3.23 9.96 22.02 0.22 -3.01 15 20 C -0.05 -1.05 9.80 22.32 0.22 -0.83 15 21 C -0.08 -2.11 6.34 22.42 0.14 -1.96 15 22 Cl -0.07 -1.51 28.97 -2.72 -0.08 -1.58 15 23 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.07 3.82 6.07 -2.39 -0.01 3.81 15 26 H 0.27 13.92 8.31 -92.71 -0.77 13.15 15 27 H 0.14 4.06 8.06 -2.92 -0.02 4.03 15 28 H 0.17 2.42 8.06 -2.91 -0.02 2.39 15 29 H 0.17 2.37 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -62.90 271.77 3.03 -59.87 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -0.73 Total: 8.63 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 2.50 Total: -30.09 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -0.68 Total: -82.58 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -62.90 3.03 -59.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.108 kcal (2) G-P(sol) polarization free energy of solvation -62.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds