Wall clock time and date at job start Mon Mar 30 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40506 * 120.14294 * 2 1 4 4 C 1.34920 * 120.31296 * 180.02562 * 3 2 1 5 5 N 1.36565 * 120.60411 * 359.95972 * 4 3 2 6 6 C 1.36804 * 132.57750 * 180.02562 * 5 4 3 7 7 Cl 1.73596 * 126.41997 * 359.96149 * 6 5 4 8 8 C 1.35197 * 107.17143 * 180.02562 * 6 5 4 9 9 C 1.50700 * 125.69510 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46809 * 89.99731 * 9 8 6 11 11 H 1.08000 * 120.00489 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99969 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00442 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99895 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47418 * 89.99768 * 14 12 10 16 16 H 1.48499 * 109.47498 * 210.00105 * 14 12 10 17 17 H 1.48504 * 109.47133 * 329.99989 * 14 12 10 18 18 N 1.33591 * 108.61033 * 359.97438 * 8 6 5 19 19 C 1.32504 * 109.16647 * 0.02562 * 18 8 6 20 20 C 1.36003 * 120.14292 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46981 * 270.04903 * 1 2 3 22 22 H 1.08997 * 109.46860 * 30.04754 * 1 2 3 23 23 H 1.08997 * 109.46730 * 150.04970 * 1 2 3 24 24 H 1.08001 * 119.84545 * 359.96658 * 3 2 1 25 25 H 1.07997 * 119.70089 * 180.23471 * 4 3 2 26 26 H 1.08996 * 109.46839 * 209.99595 * 9 8 6 27 27 H 1.08993 * 109.46805 * 329.99691 * 9 8 6 28 28 H 0.97001 * 120.00307 * 179.97438 * 13 12 10 29 29 H 1.08002 * 120.33779 * 0.02898 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2151 0.0000 4 6 3.5618 1.2191 -0.0005 5 7 4.2605 0.0457 -0.0002 6 6 5.5996 -0.2341 -0.0002 7 17 6.8942 0.9224 -0.0014 8 6 5.7261 -1.5802 -0.0004 9 6 7.0269 -2.3411 -0.0010 10 6 7.4610 -2.5948 1.4197 11 1 6.8557 -2.2402 2.2408 12 6 8.6313 -3.2789 1.6711 13 7 9.0105 -3.4999 2.9109 14 14 9.6786 -3.8917 0.2509 15 1 10.6627 -2.8454 -0.1261 16 1 10.3989 -5.1234 0.6623 17 1 8.8068 -4.1935 -0.9128 18 7 4.5055 -2.1231 0.0000 19 6 3.5994 -1.1563 -0.0001 20 6 2.1900 -1.1761 0.0005 21 1 -0.3633 0.0009 1.0277 22 1 -0.3633 0.8895 -0.5146 23 1 -0.3633 -0.8904 -0.5131 24 1 1.6724 2.1503 -0.0005 25 1 4.0941 2.1587 0.0033 26 1 6.8909 -3.2927 -0.5148 27 1 7.7896 -1.7563 -0.5150 28 1 9.8337 -3.9815 3.0878 29 1 1.6578 -2.1159 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260457071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:02 Heat of formation + Delta-G solvation = 53.365400 kcal Electronic energy + Delta-G solvation = -15369.568508 eV Core-core repulsion = 12704.789661 eV Total energy + Delta-G solvation = -2664.778847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.82810 -38.91940 -37.71268 -35.61772 -34.90582 -32.79364 -30.81835 -30.33265 -27.41604 -25.17477 -23.94761 -22.79648 -21.34164 -19.05059 -19.02739 -17.68923 -17.12328 -16.53967 -16.21786 -15.80704 -15.41465 -14.93207 -14.34608 -14.07765 -13.85029 -13.38070 -13.16453 -13.04377 -12.87341 -12.64919 -12.47239 -12.35782 -12.32074 -11.86858 -11.63750 -11.32944 -11.05998 -10.77408 -9.61377 -8.74461 -8.28863 -6.33895 -0.20560 0.15063 0.51680 1.37347 1.40116 1.52486 1.73864 1.87104 2.36987 2.48334 3.03424 3.21149 3.44732 3.79977 3.89240 4.14518 4.35756 4.43380 4.64316 4.80921 4.91147 4.92579 5.00859 5.14587 5.23470 5.35083 5.44448 5.55921 5.59356 6.02022 6.24039 6.67100 6.81224 7.27546 8.88186 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.032913 B = 0.006325 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.524176 B = 4425.580583 C = 4905.401572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.044 4.044 3 C -0.126 4.126 4 C 0.041 3.959 5 N -0.367 5.367 6 C -0.055 4.055 7 Cl 0.009 6.991 8 C 0.109 3.891 9 C 0.063 3.937 10 C -0.510 4.510 11 H 0.020 0.980 12 C 0.013 3.987 13 N -0.947 5.947 14 Si 0.947 3.053 15 H -0.257 1.257 16 H -0.278 1.278 17 H -0.248 1.248 18 N -0.533 5.533 19 C 0.228 3.772 20 C -0.116 4.116 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.200 0.800 25 H 0.184 0.816 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 12.999 -9.403 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.080 4.080 5 N -0.042 5.042 6 C -0.191 4.191 7 Cl 0.037 6.963 8 C -0.025 4.025 9 C 0.025 3.975 10 C -0.549 4.549 11 H 0.038 0.962 12 C -0.184 4.184 13 N -0.587 5.587 14 Si 0.769 3.231 15 H -0.182 1.182 16 H -0.204 1.204 17 H -0.172 1.172 18 N -0.255 5.255 19 C -0.015 4.015 20 C -0.136 4.136 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.098 0.902 24 H 0.217 0.783 25 H 0.201 0.799 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.342 12.233 -9.301 22.433 hybrid contribution 1.378 0.383 0.131 1.436 sum -14.965 12.616 -9.170 21.615 Atomic orbital electron populations 1.20891 0.86294 1.05022 1.04148 1.20305 0.99072 0.90935 0.94678 1.21304 0.90765 1.00961 1.01620 1.22360 0.94391 0.88426 1.02860 1.42686 1.05165 1.09117 1.47268 1.21087 0.80578 0.91700 1.25755 1.98318 1.42812 1.57472 1.97733 1.20980 0.94770 0.89114 0.97588 1.18053 0.87749 0.95049 0.96668 1.20843 1.06962 1.36306 0.90752 0.96185 1.25885 0.98527 0.95293 0.98700 1.70043 1.24629 1.42743 1.21329 0.85705 0.79054 0.78616 0.79704 1.18200 1.20385 1.17167 1.70733 0.98718 1.30316 1.25744 1.21496 0.95534 0.79642 1.04849 1.20406 0.86023 1.01740 1.05457 0.89231 0.88393 0.90229 0.78281 0.79926 0.94767 0.93539 0.92206 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.02 71.24 0.71 -0.25 15 2 C -0.04 -0.79 5.88 -19.83 -0.12 -0.91 15 3 C -0.13 -2.05 9.67 22.06 0.21 -1.83 15 4 C 0.04 0.97 10.93 83.19 0.91 1.88 15 5 N -0.37 -13.14 2.95 -342.05 -1.01 -14.15 15 6 C -0.05 -2.32 7.59 83.22 0.63 -1.69 15 7 Cl 0.01 0.32 28.84 -2.72 -0.08 0.24 15 8 C 0.11 5.41 6.25 41.59 0.26 5.67 15 9 C 0.06 3.36 4.41 29.10 0.13 3.49 15 10 C -0.51 -31.75 9.65 25.60 0.25 -31.50 15 11 H 0.02 1.40 7.98 -2.91 -0.02 1.38 15 12 C 0.01 0.80 5.47 84.65 0.46 1.26 15 13 N -0.95 -61.37 13.96 21.45 0.30 -61.07 15 14 Si 0.95 45.59 27.47 68.60 1.88 47.48 15 15 H -0.26 -11.63 7.11 99.48 0.71 -10.93 15 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 17 H -0.25 -11.29 6.54 99.48 0.65 -10.64 15 18 N -0.53 -25.73 11.32 -182.23 -2.06 -27.80 15 19 C 0.23 8.77 7.81 134.09 1.05 9.82 15 20 C -0.12 -3.15 9.75 22.42 0.22 -2.93 15 21 H 0.09 0.67 8.14 -2.39 -0.02 0.66 15 22 H 0.10 0.42 8.10 -2.39 -0.02 0.40 15 23 H 0.08 0.66 8.08 -2.39 -0.02 0.64 15 24 H 0.20 1.22 8.06 -2.91 -0.02 1.19 15 25 H 0.18 3.31 8.06 -2.91 -0.02 3.29 15 26 H 0.03 1.83 7.20 -2.39 -0.02 1.81 15 27 H 0.05 2.31 7.31 -2.39 -0.02 2.30 15 28 H 0.27 16.09 8.31 -92.71 -0.77 15.32 15 29 H 0.16 3.84 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -80.19 272.01 4.86 -75.33 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: 1.11 Total: -3.04 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.72 Total: -16.99 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -2.77 Total: -103.02 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.48 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -80.19 4.86 -75.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260457071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.698 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds