Wall clock time and date at job start Mon Mar 30 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47643 * 270.00205 * 3 2 1 5 5 H 1.48500 * 109.47248 * 30.00252 * 3 2 1 6 6 H 1.48507 * 109.47354 * 150.00267 * 3 2 1 7 7 C 1.37879 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99615 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.30238 * 126.10291 * 269.99776 * 11 10 9 13 13 N 1.39873 * 110.08596 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.46760 * 179.97438 * 13 12 11 15 15 C 1.37075 * 109.07099 * 359.97438 * 13 12 11 16 16 C 1.39287 * 133.83667 * 179.97438 * 15 13 12 17 17 C 1.36580 * 119.86918 * 180.02562 * 16 15 13 18 18 C 1.39069 * 120.80623 * 359.96572 * 17 16 15 19 19 Cl 1.73596 * 119.70072 * 180.02562 * 18 17 16 20 20 C 1.36557 * 120.59632 * 0.05174 * 18 17 16 21 21 C 1.39955 * 119.62811 * 359.96633 * 20 18 17 22 22 H 0.97000 * 120.00211 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47357 * 59.99618 * 9 7 2 24 24 H 1.09001 * 109.47154 * 299.99786 * 9 7 2 25 25 H 1.08991 * 109.47373 * 60.00108 * 10 9 7 26 26 H 1.09001 * 109.46839 * 299.99788 * 10 9 7 27 27 H 1.07993 * 120.06593 * 0.04976 * 16 15 13 28 28 H 1.07996 * 119.59716 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.18363 * 180.23682 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5286 -2.6365 -0.0022 12 7 6.2960 -2.6357 -1.0545 13 7 7.6404 -2.6365 -0.6685 14 1 8.3994 -2.6365 -1.2725 15 6 7.7134 -2.6374 0.7003 16 6 8.7681 -2.6389 1.6102 17 6 8.5094 -2.6400 2.9513 18 6 7.2017 -2.6389 3.4244 19 17 6.9059 -2.6397 5.1350 20 6 6.1482 -2.6378 2.5556 21 6 6.3885 -2.6370 1.1768 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6579 -3.1498 -0.8924 26 1 3.6585 -3.1509 0.8875 27 1 9.7882 -2.6388 1.2559 28 1 9.3305 -2.6407 3.6528 29 1 5.1353 -2.6331 2.9303 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:02 Heat of formation + Delta-G solvation = 62.009484 kcal Electronic energy + Delta-G solvation = -15163.479334 eV Core-core repulsion = 12499.075322 eV Total energy + Delta-G solvation = -2664.404011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.23723 -37.61857 -36.02373 -34.44044 -32.52653 -30.94629 -29.82455 -29.03354 -25.69890 -23.23089 -22.22835 -21.31922 -19.35601 -17.91543 -17.00111 -16.72132 -15.70052 -14.90246 -14.68778 -14.19638 -14.11147 -13.18607 -13.03532 -12.97150 -12.60142 -12.52773 -11.67265 -11.45223 -11.13548 -11.04668 -10.98674 -10.65361 -10.38727 -10.02023 -9.77916 -9.64797 -9.23906 -8.69118 -8.54645 -7.88309 -6.05662 -4.04479 0.87127 1.28140 2.16200 2.60186 2.78277 3.31935 3.39336 3.43962 3.61929 4.45144 4.48503 4.62664 4.77265 4.99135 5.20760 5.28847 5.36435 5.69720 5.78946 5.97198 6.17488 6.24122 6.30632 6.42462 6.56278 6.79324 7.21237 7.26837 7.36219 7.74322 7.77838 8.49563 8.98264 9.56444 11.07396 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.006347 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.785386 B = 4410.202690 C = 5187.159070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.034 4.034 11 C 0.133 3.867 12 N -0.256 5.256 13 N -0.515 5.515 14 H 0.437 0.563 15 C 0.131 3.869 16 C -0.136 4.136 17 C -0.063 4.063 18 C -0.082 4.082 19 Cl -0.075 7.075 20 C -0.016 4.016 21 C -0.165 4.165 22 H 0.264 0.736 23 H 0.020 0.980 24 H 0.016 0.984 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.613 -5.786 5.645 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.043 4.043 10 C -0.073 4.073 11 C -0.045 4.045 12 N -0.069 5.069 13 N -0.228 5.228 14 H 0.282 0.718 15 C 0.013 3.987 16 C -0.158 4.158 17 C -0.084 4.084 18 C -0.110 4.110 19 Cl -0.047 7.047 20 C -0.037 4.037 21 C -0.173 4.173 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.480 -5.674 4.470 19.842 hybrid contribution 0.888 1.008 0.606 1.473 sum 19.368 -4.667 5.077 20.559 Atomic orbital electron populations 1.69900 1.06241 1.26953 1.50859 1.24964 0.94684 0.99045 0.94425 0.86834 0.80450 0.83795 0.78595 1.20275 1.21282 1.18985 1.21049 0.88915 0.94707 1.51266 0.90614 1.19541 0.97280 0.90553 0.96913 1.20280 0.82043 1.01570 1.03448 1.24273 0.97843 0.94928 0.87448 1.76707 0.86505 1.20573 1.23074 1.45987 1.06337 1.67399 1.03032 0.71850 1.18935 0.95543 0.98671 0.85538 1.19663 0.97059 1.07903 0.91202 1.20501 0.95189 0.97835 0.94916 1.20182 0.94357 1.11699 0.84794 1.98354 1.96402 1.97386 1.12530 1.20341 0.99417 0.93798 0.90163 1.19762 0.91927 1.11781 0.93827 0.92656 0.96216 0.96613 0.90079 0.89879 0.85032 0.84591 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 15 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 15 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 15 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 15 9 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 15 10 C -0.03 -0.66 5.75 -27.88 -0.16 -0.82 15 11 C 0.13 2.40 6.69 -80.19 -0.54 1.87 15 12 N -0.26 -4.48 12.55 34.84 0.44 -4.04 15 13 N -0.52 -7.11 7.37 32.36 0.24 -6.87 15 14 H 0.44 4.35 8.96 -182.77 -1.64 2.71 15 15 C 0.13 1.82 7.34 -84.16 -0.62 1.20 15 16 C -0.14 -1.48 10.03 -39.79 -0.40 -1.88 15 17 C -0.06 -0.68 9.74 -39.87 -0.39 -1.07 15 18 C -0.08 -1.05 6.28 -39.88 -0.25 -1.30 15 19 Cl -0.08 -0.90 28.93 -51.86 -1.50 -2.40 15 20 C -0.02 -0.24 9.82 -39.55 -0.39 -0.62 15 21 C -0.16 -2.66 6.33 -105.21 -0.67 -3.32 15 22 H 0.26 7.54 8.31 -40.82 -0.34 7.21 15 23 H 0.02 0.47 7.20 -51.93 -0.37 0.09 15 24 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 15 25 H 0.08 1.56 8.14 -51.93 -0.42 1.14 15 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 15 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 29 H 0.14 2.05 8.06 -52.49 -0.42 1.62 15 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -31.40 272.63 -8.66 -40.07 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.11 Total: -2.21 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.95 Total: -19.09 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 1.45 Total: -37.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.40 -8.66 -40.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.075 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds