Wall clock time and date at job start Mon Mar 30 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47643 * 270.00205 * 3 2 1 5 5 H 1.48500 * 109.47248 * 30.00252 * 3 2 1 6 6 H 1.48507 * 109.47354 * 150.00267 * 3 2 1 7 7 C 1.37879 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99615 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46998 * 180.02562 * 10 9 7 12 12 N 1.30238 * 126.10291 * 269.99776 * 11 10 9 13 13 N 1.39873 * 110.08596 * 180.02562 * 12 11 10 14 14 H 0.97001 * 125.46760 * 179.97438 * 13 12 11 15 15 C 1.37075 * 109.07099 * 359.97438 * 13 12 11 16 16 C 1.39287 * 133.83667 * 179.97438 * 15 13 12 17 17 C 1.36580 * 119.86918 * 180.02562 * 16 15 13 18 18 C 1.39069 * 120.80623 * 359.96572 * 17 16 15 19 19 Cl 1.73596 * 119.70072 * 180.02562 * 18 17 16 20 20 C 1.36557 * 120.59632 * 0.05174 * 18 17 16 21 21 C 1.39955 * 119.62811 * 359.96633 * 20 18 17 22 22 H 0.97000 * 120.00211 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47357 * 59.99618 * 9 7 2 24 24 H 1.09001 * 109.47154 * 299.99786 * 9 7 2 25 25 H 1.08991 * 109.47373 * 60.00108 * 10 9 7 26 26 H 1.09001 * 109.46839 * 299.99788 * 10 9 7 27 27 H 1.07993 * 120.06593 * 0.04976 * 16 15 13 28 28 H 1.07996 * 119.59716 * 180.02562 * 17 16 15 29 29 H 1.07999 * 120.18363 * 180.23682 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5286 -2.6365 -0.0022 12 7 6.2960 -2.6357 -1.0545 13 7 7.6404 -2.6365 -0.6685 14 1 8.3994 -2.6365 -1.2725 15 6 7.7134 -2.6374 0.7003 16 6 8.7681 -2.6389 1.6102 17 6 8.5094 -2.6400 2.9513 18 6 7.2017 -2.6389 3.4244 19 17 6.9059 -2.6397 5.1350 20 6 6.1482 -2.6378 2.5556 21 6 6.3885 -2.6370 1.1768 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.6579 -3.1498 -0.8924 26 1 3.6585 -3.1509 0.8875 27 1 9.7882 -2.6388 1.2559 28 1 9.3305 -2.6407 3.6528 29 1 5.1353 -2.6331 2.9303 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:01 Heat of formation + Delta-G solvation = 42.670052 kcal Electronic energy + Delta-G solvation = -15164.317954 eV Core-core repulsion = 12499.075322 eV Total energy + Delta-G solvation = -2665.242632 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.35343 -38.63695 -37.01550 -36.13813 -34.32803 -32.41407 -30.98576 -30.21891 -27.52172 -24.25092 -23.31576 -23.12671 -20.74324 -19.10322 -18.74793 -18.05890 -16.67943 -16.44766 -15.88909 -15.82417 -15.14670 -14.93353 -14.65816 -14.36730 -13.97983 -13.50117 -13.41339 -12.96399 -12.55802 -12.29267 -12.17830 -11.95102 -11.88601 -11.80760 -11.51822 -11.33445 -10.97408 -10.76304 -9.75868 -8.93833 -8.28941 -6.32558 -0.16218 0.27124 1.18909 1.34701 1.35613 1.37473 1.47911 1.73993 2.35477 2.60186 3.06474 3.42673 3.49424 3.68219 4.07753 4.24351 4.36703 4.51127 4.58847 4.64690 4.87055 4.91864 5.10528 5.22575 5.27988 5.39186 5.45159 5.61298 5.64241 6.26968 6.35403 6.58755 6.74490 7.31875 8.87365 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.006347 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.785386 B = 4410.202690 C = 5187.159070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.044 0.956 9 C 0.004 3.996 10 C -0.024 4.024 11 C 0.110 3.890 12 N -0.276 5.276 13 N -0.500 5.500 14 H 0.454 0.546 15 C 0.125 3.875 16 C -0.119 4.119 17 C -0.057 4.057 18 C -0.079 4.079 19 Cl -0.069 7.069 20 C -0.040 4.040 21 C -0.190 4.190 22 H 0.267 0.733 23 H 0.020 0.980 24 H 0.011 0.989 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.175 0.825 28 H 0.172 0.828 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.162 -5.237 6.386 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.062 0.938 9 C -0.034 4.034 10 C -0.064 4.064 11 C -0.067 4.067 12 N -0.090 5.090 13 N -0.216 5.216 14 H 0.302 0.698 15 C 0.007 3.993 16 C -0.141 4.141 17 C -0.078 4.078 18 C -0.107 4.107 19 Cl -0.041 7.041 20 C -0.061 4.061 21 C -0.198 4.198 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.192 0.808 28 H 0.189 0.811 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 22.050 -5.139 5.208 23.232 hybrid contribution -0.160 0.739 0.426 0.868 sum 21.890 -4.400 5.635 23.028 Atomic orbital electron populations 1.70037 1.08013 1.28116 1.52488 1.25850 0.95494 1.02986 0.94195 0.85791 0.79494 0.79156 0.79040 1.19507 1.20545 1.17695 1.21377 0.91272 0.93592 1.50370 0.93758 1.19375 0.94324 0.93325 0.96410 1.19961 0.84037 0.98898 1.03484 1.23869 0.96917 0.97039 0.88885 1.76560 0.88325 1.20564 1.23572 1.45898 1.05501 1.66549 1.03619 0.69820 1.19251 0.95552 0.98859 0.85592 1.20140 0.98114 1.05344 0.90470 1.20932 0.95093 0.96134 0.95640 1.20385 0.94907 1.10551 0.84900 1.98360 1.96501 1.97283 1.11915 1.20344 0.99825 0.95786 0.90183 1.19844 0.92682 1.13428 0.93882 0.92406 0.96156 0.97103 0.90700 0.89347 0.80804 0.81085 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 15 2 C 0.01 0.72 5.47 84.66 0.46 1.18 15 3 Si 0.94 45.15 27.47 68.60 1.88 47.03 15 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 15 7 C -0.53 -30.35 9.66 25.60 0.25 -30.11 15 8 H 0.04 2.74 7.99 -2.91 -0.02 2.72 15 9 C 0.00 0.21 4.02 29.85 0.12 0.33 15 10 C -0.02 -0.98 5.75 29.85 0.17 -0.81 15 11 C 0.11 3.98 6.69 44.79 0.30 4.28 15 12 N -0.28 -9.46 12.55 -43.69 -0.55 -10.01 15 13 N -0.50 -12.68 7.37 -51.52 -0.38 -13.06 15 14 H 0.45 7.73 8.96 -213.46 -1.91 5.82 15 15 C 0.12 3.15 7.34 39.20 0.29 3.43 15 16 C -0.12 -2.04 10.03 22.13 0.22 -1.82 15 17 C -0.06 -0.99 9.74 22.08 0.22 -0.77 15 18 C -0.08 -1.84 6.28 22.08 0.14 -1.70 15 19 Cl -0.07 -1.51 28.93 -2.72 -0.08 -1.59 15 20 C -0.04 -1.15 9.82 22.29 0.22 -0.93 15 21 C -0.19 -5.96 6.33 -20.24 -0.13 -6.09 15 22 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 23 H 0.02 0.96 7.20 -2.39 -0.02 0.95 15 24 H 0.01 0.52 7.57 -2.39 -0.02 0.50 15 25 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 26 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 27 H 0.17 1.54 8.06 -2.91 -0.02 1.51 15 28 H 0.17 1.80 8.06 -2.91 -0.02 1.78 15 29 H 0.13 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -68.96 272.63 2.65 -66.32 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -0.79 Total: 3.26 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 2.26 Total: -33.01 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -0.63 Total: -82.01 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -68.96 2.65 -66.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.988 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds